freedman_2014_plosgenetics_vcffiles

Included in the tarball are merged vcf files, for individual autosomes, for the 6 canid genomes sequenced for and described in "Genome Sequencing Highlights the Dynamic Early History of Dogs", Freedman et al, PLoS Genetics 2014. Those are: Chinese wolf, Israeli wolf, Croatian wolf, Golden...

Full description

Bibliographic Details
Main Authors: Freedman, Adam H., Gronau, Ilan, Schweizer, Rena M., Ortega-Del Vecchyo, Diego, Han, Eunjung, Silva, Pedro M., Galaverni, Marco, Fan, Zhenxin, Marx, Peter, Lorente-Galdos, Belen, Beale, Holly, Ramirez, Oscar, Hormozdiari, Farhad, Alkan, Can, Vilà, Carles, Squire, Kevin, Geffen, Eli, Kusak, Josip, Boyko, Adam R., Parker, Heidi G., Lee, Clarence, Tadigotla, Vasisht, Siepel, Adam, Bustamante, Carlos D., Harkins, Timothy T., Nelson, Stanley F., Ostrander, Elaine A., Marques-Bonet, Tomas, Wayne, Robert K., Novembre, John
Format: Dataset
Language:unknown
Published: Dryad Digital Repository 2016
Subjects:
dog domestication
demographic history
genome sequencing
admixture
Canis lupus
Canis lupus familiaris
Canis aureus
Online Access:https://dx.doi.org/10.5061/dryad.sk3p7/1
http://datadryad.org/resource/doi:10.5061/dryad.sk3p7/1
Description
Summary:Included in the tarball are merged vcf files, for individual autosomes, for the 6 canid genomes sequenced for and described in "Genome Sequencing Highlights the Dynamic Early History of Dogs", Freedman et al, PLoS Genetics 2014. Those are: Chinese wolf, Israeli wolf, Croatian wolf, Golden jackal, Dingo and Basenji.These files have been converted to boxer reference genome CanFam 3.1 coordinates (the original paper was in v. 3.0 coordinates). See Freedman et al. 2014 for a detailed description of filters.

Similar Items