Data from: A genomewide catalogue of single nucleotide polymorphisms in white-beaked and Atlantic white-sided dolphins ...
The field of population genetics is rapidly moving into population genomics as the quantity of data generated by high-throughput sequencing platforms increases. In this study, we used restriction-site-associated DNA sequencing (RADSeq) to recover genomewide genotypes from 70 white-beaked (Lagenorhyn...
Main Authors: | , , , , , , , , , , , , , , , , |
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Format: | Dataset |
Language: | English |
Published: |
Dryad
2015
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Subjects: | |
Online Access: | https://dx.doi.org/10.5061/dryad.sd28r https://datadryad.org/stash/dataset/doi:10.5061/dryad.sd28r |
Summary: | The field of population genetics is rapidly moving into population genomics as the quantity of data generated by high-throughput sequencing platforms increases. In this study, we used restriction-site-associated DNA sequencing (RADSeq) to recover genomewide genotypes from 70 white-beaked (Lagenorhynchus albirostris) and 43 Atlantic white-sided dolphins (L. acutus) gathered throughout their north-east Atlantic distribution range. Both species are at a high risk of being negatively affected by climate change. Here, we provide a resource of 38 240 RAD-tags and 52 981 nuclear SNPs shared between both species. We have estimated overall higher levels of nucleotide diversity in white-sided (π = 0.0492 ± 0.0006%) than in white-beaked dolphins (π = 0.0300 ± 0.0004%). White-sided dolphins sampled in the Faroe Islands, belonging to two pods (N = 7 and N = 11), showed similar levels of diversity (π = 0.0317 ± 0.0007% and 0.0267 ± 0.0006%, respectively) compared to unrelated individuals of the same species sampled ... : structure file Genome-wide SNP catalogue in Lagenorhynchus sppTab Separated Values File in "Structure" format. This file was used to run the software "Admixture". Missing data=0, A=1, C=2, G=3, T=4.vcf file Genome-wide SNP catalogue in Lagenorhynchus sppVariant Call Format (vcf) file containing all the SNPs found within the 113 sampled dolphins (N=40 Lagenorhynchus acutus, white-sided dolphin, and N=73 L.albirostris, white-beaked dolphin). ... |
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