Data from: A genomewide catalogue of single nucleotide polymorphisms in white-beaked and Atlantic white-sided dolphins ...

The field of population genetics is rapidly moving into population genomics as the quantity of data generated by high-throughput sequencing platforms increases. In this study, we used restriction-site-associated DNA sequencing (RADSeq) to recover genomewide genotypes from 70 white-beaked (Lagenorhyn...

Full description

Bibliographic Details
Main Authors: Fernández, Ruth, Schubert, Mikkel, Vargas-Velázquez, A. M., Brownlow, Andrew, Víkingsson, Gisli A., Siebert, Ursula, Jensen, Lasse Fast, Øien, Nils, Wall, Dave, Rogan, Emer, Mikkelsen, Bjarni, Dabin, Willy, Guillot, Gilles, Orlando, Ludovic, Alfarhan, A. H., Alquraishi, S. A., Al-Rasheid, K. A. S.
Format: Dataset
Language:English
Published: Dryad 2015
Subjects:
Atlantic white-sided dolphin
Lagenorhynchus albirostris
white-beaked dolphin
SNPs
Legenorhynchus albirostris
structure file
Lagenorhynchus acutus
cetacean
Faroe Islands
North East Atlantic
White-beaked dolphin
Online Access:https://dx.doi.org/10.5061/dryad.sd28r
https://datadryad.org/stash/dataset/doi:10.5061/dryad.sd28r
Description
Summary:The field of population genetics is rapidly moving into population genomics as the quantity of data generated by high-throughput sequencing platforms increases. In this study, we used restriction-site-associated DNA sequencing (RADSeq) to recover genomewide genotypes from 70 white-beaked (Lagenorhynchus albirostris) and 43 Atlantic white-sided dolphins (L. acutus) gathered throughout their north-east Atlantic distribution range. Both species are at a high risk of being negatively affected by climate change. Here, we provide a resource of 38 240 RAD-tags and 52 981 nuclear SNPs shared between both species. We have estimated overall higher levels of nucleotide diversity in white-sided (π = 0.0492 ± 0.0006%) than in white-beaked dolphins (π = 0.0300 ± 0.0004%). White-sided dolphins sampled in the Faroe Islands, belonging to two pods (N = 7 and N = 11), showed similar levels of diversity (π = 0.0317 ± 0.0007% and 0.0267 ± 0.0006%, respectively) compared to unrelated individuals of the same species sampled ... : structure file Genome-wide SNP catalogue in Lagenorhynchus sppTab Separated Values File in "Structure" format. This file was used to run the software "Admixture". Missing data=0, A=1, C=2, G=3, T=4.vcf file Genome-wide SNP catalogue in Lagenorhynchus sppVariant Call Format (vcf) file containing all the SNPs found within the 113 sampled dolphins (N=40 Lagenorhynchus acutus, white-sided dolphin, and N=73 L.albirostris, white-beaked dolphin). ...

Similar Items