Sequence alignment file of the 16S rRNA PCR primers and 41,113 sequences from 79 bacterial zoonotic genera
This FASTA file contains 41,113 sequences of the V4 hypervariable region from 79 bacterial zoonotic genera extracted from the Silva SSU database v119, and the forward and reverse primers used in our 16S rRNA amplicon sequencing experiment.
| Main Authors: | , , , , , , , , , , , , |
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| Format: | Dataset |
| Language: | unknown |
| Published: |
Dryad Digital Repository
2016
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| Subjects: | |
| Online Access: | https://dx.doi.org/10.5061/dryad.m3p7d/12 http://datadryad.org/resource/doi:10.5061/dryad.m3p7d/12 |
| _version_ | 1821691847607582720 |
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| author | Galan, Maxime Razzauti, Maria Bard, Emilie Bernard, Maria Brouat, Carine Charbonnel, Nathalie Dehne-Garcia, Alexandre Loiseau, Anne Tatard, Caroline Tamisier, Lucie Vayssier-Taussat, Muriel Vignes, Hélène Cosson, Jean-François |
| author_facet | Galan, Maxime Razzauti, Maria Bard, Emilie Bernard, Maria Brouat, Carine Charbonnel, Nathalie Dehne-Garcia, Alexandre Loiseau, Anne Tatard, Caroline Tamisier, Lucie Vayssier-Taussat, Muriel Vignes, Hélène Cosson, Jean-François |
| author_sort | Galan, Maxime |
| collection | DataCite |
| description | This FASTA file contains 41,113 sequences of the V4 hypervariable region from 79 bacterial zoonotic genera extracted from the Silva SSU database v119, and the forward and reverse primers used in our 16S rRNA amplicon sequencing experiment. |
| format | Dataset |
| genre | Rattus rattus |
| genre_facet | Rattus rattus |
| id | ftdatacite:10.5061/dryad.m3p7d/12 |
| institution | Open Polar |
| language | unknown |
| op_collection_id | ftdatacite |
| op_doi | https://doi.org/10.5061/dryad.m3p7d/12 https://doi.org/10.5061/dryad.m3p7d |
| op_relation | https://dx.doi.org/10.5061/dryad.m3p7d |
| op_rights | http://creativecommons.org/publicdomain/zero/1.0 |
| op_rightsnorm | CC0 |
| publishDate | 2016 |
| publisher | Dryad Digital Repository |
| record_format | openpolar |
| spelling | ftdatacite:10.5061/dryad.m3p7d/12 2025-01-17T00:26:56+00:00 Sequence alignment file of the 16S rRNA PCR primers and 41,113 sequences from 79 bacterial zoonotic genera Galan, Maxime Razzauti, Maria Bard, Emilie Bernard, Maria Brouat, Carine Charbonnel, Nathalie Dehne-Garcia, Alexandre Loiseau, Anne Tatard, Caroline Tamisier, Lucie Vayssier-Taussat, Muriel Vignes, Hélène Cosson, Jean-François 2016 https://dx.doi.org/10.5061/dryad.m3p7d/12 http://datadryad.org/resource/doi:10.5061/dryad.m3p7d/12 unknown Dryad Digital Repository https://dx.doi.org/10.5061/dryad.m3p7d http://creativecommons.org/publicdomain/zero/1.0 CC0 Zoonoses Rodents West Africa metagenomics 16S rRNA amplicon sequencing MiSeq Next-generation sequencing NGS High-throughput sequencing HTS Metabarcoding Epidemiology Disease monitoring Senegal Mus musculus domesticus Rattus rattus Mastomys natalensis Mastomys erythroleucus Borrelia Bartonella Mycoplasma Ehrlichia Rickettsia Streptobacillus Orientia dataset Dataset DataFile 2016 ftdatacite https://doi.org/10.5061/dryad.m3p7d/12 https://doi.org/10.5061/dryad.m3p7d 2021-11-05T12:55:41Z This FASTA file contains 41,113 sequences of the V4 hypervariable region from 79 bacterial zoonotic genera extracted from the Silva SSU database v119, and the forward and reverse primers used in our 16S rRNA amplicon sequencing experiment. Dataset Rattus rattus DataCite |
| spellingShingle | Zoonoses Rodents West Africa metagenomics 16S rRNA amplicon sequencing MiSeq Next-generation sequencing NGS High-throughput sequencing HTS Metabarcoding Epidemiology Disease monitoring Senegal Mus musculus domesticus Rattus rattus Mastomys natalensis Mastomys erythroleucus Borrelia Bartonella Mycoplasma Ehrlichia Rickettsia Streptobacillus Orientia Galan, Maxime Razzauti, Maria Bard, Emilie Bernard, Maria Brouat, Carine Charbonnel, Nathalie Dehne-Garcia, Alexandre Loiseau, Anne Tatard, Caroline Tamisier, Lucie Vayssier-Taussat, Muriel Vignes, Hélène Cosson, Jean-François Sequence alignment file of the 16S rRNA PCR primers and 41,113 sequences from 79 bacterial zoonotic genera |
| title | Sequence alignment file of the 16S rRNA PCR primers and 41,113 sequences from 79 bacterial zoonotic genera |
| title_full | Sequence alignment file of the 16S rRNA PCR primers and 41,113 sequences from 79 bacterial zoonotic genera |
| title_fullStr | Sequence alignment file of the 16S rRNA PCR primers and 41,113 sequences from 79 bacterial zoonotic genera |
| title_full_unstemmed | Sequence alignment file of the 16S rRNA PCR primers and 41,113 sequences from 79 bacterial zoonotic genera |
| title_short | Sequence alignment file of the 16S rRNA PCR primers and 41,113 sequences from 79 bacterial zoonotic genera |
| title_sort | sequence alignment file of the 16s rrna pcr primers and 41,113 sequences from 79 bacterial zoonotic genera |
| topic | Zoonoses Rodents West Africa metagenomics 16S rRNA amplicon sequencing MiSeq Next-generation sequencing NGS High-throughput sequencing HTS Metabarcoding Epidemiology Disease monitoring Senegal Mus musculus domesticus Rattus rattus Mastomys natalensis Mastomys erythroleucus Borrelia Bartonella Mycoplasma Ehrlichia Rickettsia Streptobacillus Orientia |
| topic_facet | Zoonoses Rodents West Africa metagenomics 16S rRNA amplicon sequencing MiSeq Next-generation sequencing NGS High-throughput sequencing HTS Metabarcoding Epidemiology Disease monitoring Senegal Mus musculus domesticus Rattus rattus Mastomys natalensis Mastomys erythroleucus Borrelia Bartonella Mycoplasma Ehrlichia Rickettsia Streptobacillus Orientia |
| url | https://dx.doi.org/10.5061/dryad.m3p7d/12 http://datadryad.org/resource/doi:10.5061/dryad.m3p7d/12 |