Alignment of the COI haplotypes obtained by Sanger and MiSeq sequencing for the 19 insect species included in the mock communities

This FASTA file contains 19 and 20 COI sequences generated by Sanger and Illumina Miseq sequencing respectively. The Sanger sequences correspond to a fragment of 634 to 658bp of the standard COI barcode following the Barcode of Life Consortium. The MiSeq sequences correspond to the 133bp COI minibar...

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Bibliographic Details
Main Authors: Galan, Maxime, Pons, Jean-Baptiste, Tournayre, Orianne, Pierre, Eric, Leuchtmann, Maxime, Pontier, Dominique, Charbonnel, Nathalie
Format: Dataset
Language:unknown
Published: Dryad Digital Repository 2017
Subjects:
environmental DNA eDNA
high-throughput sequencing HTS
false positives
predator-prey interactions
Western France
Poitou-Charentes
Arthropoda
Chiroptera
Barbastella barbastellus
Eptesicus serotinus
Miniopterus schreibersii
Myotis alcathoe
Myotis bechsteinii
Myotis daubentonii
Myotis emarginatus
Myotis myotis
Myotis mystacinus
Myotis nattereri
Pipistrellus kuhlii
Pipistrellus pipistrellus
Plecotus auritus
Rhinolophus euryale
Rhinolophus ferrumequinum
Rhinolophus hipposideros
Online Access:https://dx.doi.org/10.5061/dryad.kv02g/14
http://datadryad.org/resource/doi:10.5061/dryad.kv02g/14
Description
Summary:This FASTA file contains 19 and 20 COI sequences generated by Sanger and Illumina Miseq sequencing respectively. The Sanger sequences correspond to a fragment of 634 to 658bp of the standard COI barcode following the Barcode of Life Consortium. The MiSeq sequences correspond to the 133bp COI minibarcode used in this study. For this latter, only the most abundant variant for each of the 19 samples is provided, except for Forficula lesnei specimen for which an unexpected parasitoid (Triarthria setipennis) was detected and is also provided.

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