Alignment of 133bp minibarcode COI reference sequences from Barcode of Life Database and corresponding to 33 bat species found in France

This FASTA file contains 444 reference sequences available in BOLD for the 33 bat species found in France. We removed sequences showing less than 132bp for the COI minibarcode used in our study and/or showing one or more ambiguous base (N). Note that the sequences GBMA9839-15, ABBWP228-07, NOMAM103-...

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Main Authors: Galan, Maxime, Pons, Jean-Baptiste, Tournayre, Orianne, Pierre, Eric, Leuchtmann, Maxime, Pontier, Dominique, Charbonnel, Nathalie
Format: Dataset
Language:unknown
Published: Dryad Digital Repository 2017
Subjects:
Online Access:https://dx.doi.org/10.5061/dryad.kv02g/12
http://datadryad.org/resource/doi:10.5061/dryad.kv02g/12
id ftdatacite:10.5061/dryad.kv02g/12
record_format openpolar
spelling ftdatacite:10.5061/dryad.kv02g/12 2023-05-15T15:37:49+02:00 Alignment of 133bp minibarcode COI reference sequences from Barcode of Life Database and corresponding to 33 bat species found in France Galan, Maxime Pons, Jean-Baptiste Tournayre, Orianne Pierre, Eric Leuchtmann, Maxime Pontier, Dominique Charbonnel, Nathalie 2017 https://dx.doi.org/10.5061/dryad.kv02g/12 http://datadryad.org/resource/doi:10.5061/dryad.kv02g/12 unknown Dryad Digital Repository https://dx.doi.org/10.5061/dryad.kv02g http://creativecommons.org/publicdomain/zero/1.0 CC0 environmental DNA eDNA high-throughput sequencing HTS false positives predator-prey interactions Western France Poitou-Charentes Arthropoda Chiroptera Barbastella barbastellus Eptesicus serotinus Miniopterus schreibersii Myotis alcathoe Myotis bechsteinii Myotis daubentonii Myotis emarginatus Myotis myotis Myotis mystacinus Myotis nattereri Pipistrellus kuhlii Pipistrellus pipistrellus Plecotus auritus Rhinolophus euryale Rhinolophus ferrumequinum Rhinolophus hipposideros dataset Dataset DataFile 2017 ftdatacite https://doi.org/10.5061/dryad.kv02g/12 https://doi.org/10.5061/dryad.kv02g 2021-11-05T12:55:41Z This FASTA file contains 444 reference sequences available in BOLD for the 33 bat species found in France. We removed sequences showing less than 132bp for the COI minibarcode used in our study and/or showing one or more ambiguous base (N). Note that the sequences GBMA9839-15, ABBWP228-07, NOMAM103-16, NOMAM142-16 and SKBPA621-11 might not be reliable: they could have been assigned to the wrong species or may be of low quality (see results in the phylogenetic tree and Table S4, Supplemental Information). Dataset Barbastella barbastellus Myotis nattereri Pipistrellus pipistrellus DataCite Metadata Store (German National Library of Science and Technology)
institution Open Polar
collection DataCite Metadata Store (German National Library of Science and Technology)
op_collection_id ftdatacite
language unknown
topic environmental DNA eDNA
high-throughput sequencing HTS
false positives
predator-prey interactions
Western France
Poitou-Charentes
Arthropoda
Chiroptera
Barbastella barbastellus
Eptesicus serotinus
Miniopterus schreibersii
Myotis alcathoe
Myotis bechsteinii
Myotis daubentonii
Myotis emarginatus
Myotis myotis
Myotis mystacinus
Myotis nattereri
Pipistrellus kuhlii
Pipistrellus pipistrellus
Plecotus auritus
Rhinolophus euryale
Rhinolophus ferrumequinum
Rhinolophus hipposideros
spellingShingle environmental DNA eDNA
high-throughput sequencing HTS
false positives
predator-prey interactions
Western France
Poitou-Charentes
Arthropoda
Chiroptera
Barbastella barbastellus
Eptesicus serotinus
Miniopterus schreibersii
Myotis alcathoe
Myotis bechsteinii
Myotis daubentonii
Myotis emarginatus
Myotis myotis
Myotis mystacinus
Myotis nattereri
Pipistrellus kuhlii
Pipistrellus pipistrellus
Plecotus auritus
Rhinolophus euryale
Rhinolophus ferrumequinum
Rhinolophus hipposideros
Galan, Maxime
Pons, Jean-Baptiste
Tournayre, Orianne
Pierre, Eric
Leuchtmann, Maxime
Pontier, Dominique
Charbonnel, Nathalie
Alignment of 133bp minibarcode COI reference sequences from Barcode of Life Database and corresponding to 33 bat species found in France
topic_facet environmental DNA eDNA
high-throughput sequencing HTS
false positives
predator-prey interactions
Western France
Poitou-Charentes
Arthropoda
Chiroptera
Barbastella barbastellus
Eptesicus serotinus
Miniopterus schreibersii
Myotis alcathoe
Myotis bechsteinii
Myotis daubentonii
Myotis emarginatus
Myotis myotis
Myotis mystacinus
Myotis nattereri
Pipistrellus kuhlii
Pipistrellus pipistrellus
Plecotus auritus
Rhinolophus euryale
Rhinolophus ferrumequinum
Rhinolophus hipposideros
description This FASTA file contains 444 reference sequences available in BOLD for the 33 bat species found in France. We removed sequences showing less than 132bp for the COI minibarcode used in our study and/or showing one or more ambiguous base (N). Note that the sequences GBMA9839-15, ABBWP228-07, NOMAM103-16, NOMAM142-16 and SKBPA621-11 might not be reliable: they could have been assigned to the wrong species or may be of low quality (see results in the phylogenetic tree and Table S4, Supplemental Information).
format Dataset
author Galan, Maxime
Pons, Jean-Baptiste
Tournayre, Orianne
Pierre, Eric
Leuchtmann, Maxime
Pontier, Dominique
Charbonnel, Nathalie
author_facet Galan, Maxime
Pons, Jean-Baptiste
Tournayre, Orianne
Pierre, Eric
Leuchtmann, Maxime
Pontier, Dominique
Charbonnel, Nathalie
author_sort Galan, Maxime
title Alignment of 133bp minibarcode COI reference sequences from Barcode of Life Database and corresponding to 33 bat species found in France
title_short Alignment of 133bp minibarcode COI reference sequences from Barcode of Life Database and corresponding to 33 bat species found in France
title_full Alignment of 133bp minibarcode COI reference sequences from Barcode of Life Database and corresponding to 33 bat species found in France
title_fullStr Alignment of 133bp minibarcode COI reference sequences from Barcode of Life Database and corresponding to 33 bat species found in France
title_full_unstemmed Alignment of 133bp minibarcode COI reference sequences from Barcode of Life Database and corresponding to 33 bat species found in France
title_sort alignment of 133bp minibarcode coi reference sequences from barcode of life database and corresponding to 33 bat species found in france
publisher Dryad Digital Repository
publishDate 2017
url https://dx.doi.org/10.5061/dryad.kv02g/12
http://datadryad.org/resource/doi:10.5061/dryad.kv02g/12
genre Barbastella barbastellus
Myotis nattereri
Pipistrellus pipistrellus
genre_facet Barbastella barbastellus
Myotis nattereri
Pipistrellus pipistrellus
op_relation https://dx.doi.org/10.5061/dryad.kv02g
op_rights http://creativecommons.org/publicdomain/zero/1.0
op_rightsnorm CC0
op_doi https://doi.org/10.5061/dryad.kv02g/12
https://doi.org/10.5061/dryad.kv02g
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