Alignment of 133bp minibarcode COI reference sequences from Barcode of Life Database and corresponding to 33 bat species found in France

This FASTA file contains 444 reference sequences available in BOLD for the 33 bat species found in France. We removed sequences showing less than 132bp for the COI minibarcode used in our study and/or showing one or more ambiguous base (N). Note that the sequences GBMA9839-15, ABBWP228-07, NOMAM103-...

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Bibliographic Details
Main Authors: Galan, Maxime, Pons, Jean-Baptiste, Tournayre, Orianne, Pierre, Eric, Leuchtmann, Maxime, Pontier, Dominique, Charbonnel, Nathalie
Format: Dataset
Language:unknown
Published: Dryad Digital Repository 2017
Subjects:
environmental DNA eDNA
high-throughput sequencing HTS
false positives
predator-prey interactions
Western France
Poitou-Charentes
Arthropoda
Chiroptera
Barbastella barbastellus
Eptesicus serotinus
Miniopterus schreibersii
Myotis alcathoe
Myotis bechsteinii
Myotis daubentonii
Myotis emarginatus
Myotis myotis
Myotis mystacinus
Myotis nattereri
Pipistrellus kuhlii
Pipistrellus pipistrellus
Plecotus auritus
Rhinolophus euryale
Rhinolophus ferrumequinum
Rhinolophus hipposideros
Online Access:https://dx.doi.org/10.5061/dryad.kv02g/12
http://datadryad.org/resource/doi:10.5061/dryad.kv02g/12
Description
Summary:This FASTA file contains 444 reference sequences available in BOLD for the 33 bat species found in France. We removed sequences showing less than 132bp for the COI minibarcode used in our study and/or showing one or more ambiguous base (N). Note that the sequences GBMA9839-15, ABBWP228-07, NOMAM103-16, NOMAM142-16 and SKBPA621-11 might not be reliable: they could have been assigned to the wrong species or may be of low quality (see results in the phylogenetic tree and Table S4, Supplemental Information).

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