Golden eagle annotated genes - .gff file

The golden eagle genome assembly was downloaded from GenBank (Accession: GCA_000766835.1). Golden eagle scaffolds greater than 10 kb were annotated using the MAKER 2.31.9 pipeline. We used Repeat-Masker 4.0.7 to identify and mask stretches of repetitive DNA, BLAST 2.3.0 to align avian ESTs and prote...

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Bibliographic Details
Main Authors: Doyle, Jacqueline, Willoughby, Janna, Bell, Doug, Bloom, Pete, Bragin, Evgeny, Fernandez, Nadia, Katzner, Todd, Leonard, Kolbe, DeWoody, J. Andrew
Format: Dataset
Language:unknown
Published: Dryad Digital Repository 2019
Subjects:
raptors
balancing selection
heterozygote advantage
olfaction
immune function
pooled sequencing
Aquila chrysaetos
golden eagle
Online Access:https://dx.doi.org/10.5061/dryad.j6p4nb3/7
https://datadryad.org/resource/doi:10.5061/dryad.j6p4nb3/7
Description
Summary:The golden eagle genome assembly was downloaded from GenBank (Accession: GCA_000766835.1). Golden eagle scaffolds greater than 10 kb were annotated using the MAKER 2.31.9 pipeline. We used Repeat-Masker 4.0.7 to identify and mask stretches of repetitive DNA, BLAST 2.3.0 to align avian ESTs and proteins to the genome, SNAP 0.15.4 to generate ab initio gene predictions while InterProScan 5.25-64.0 was used to identify putative protein domains. This .gff file describes the gene annotations.

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