Geographical structure of endosymbiotic bacteria hosted by Bathymodiolus mussels at eastern Pacific hydrothermal vents

Sampling region of Bathymodiolus thermophilus and B. antarticus sulfur-oxidizing gammaproteobacteria EPR, East Pacific Rise GAR, Galapagos Rift PAR, Pacific-Antartic Ridge Information of population and geographic groups population group (HA) 11N EPR (HB) 9N EPR (HI) GAR EPR (HC) 7S EPR (HD) 11S EPR...

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Bibliographic Details
Main Authors: Ho, Phuong-Thao, Park, Eunji, Hong, Soon Gyu, Kim, Eun-Hye, Kim, Kangchon, Jang, Sook-Jin, Vrijenhoek, Robert C., Won, Yong-Jin
Format: Dataset
Language:unknown
Published: Dryad Digital Repository 2017
Subjects:
chemosynthetic symbiosis
deep-sea hydrothermal vent
Bathymodiolus mussels
sulfur-oxidizing endosymbiont
Gammaproteobacteria
geographical population structure
East Pacific Rise
Galápagos Rift
Pacific-Antarctic Ridge
Bathymodiolus thermophilus
Bathymodiolus antarcticus
Antarctic
Galapagos
Gar’
Pacific
Antarc*
antarcticus
antartic*
Online Access:https://dx.doi.org/10.5061/dryad.d3r64/1
http://datadryad.org/resource/doi:10.5061/dryad.d3r64/1
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Summary:Sampling region of Bathymodiolus thermophilus and B. antarticus sulfur-oxidizing gammaproteobacteria EPR, East Pacific Rise GAR, Galapagos Rift PAR, Pacific-Antartic Ridge Information of population and geographic groups population group (HA) 11N EPR (HB) 9N EPR (HI) GAR EPR (HC) 7S EPR (HD) 11S EPR (HE) 17S EPR (HF) 23S EPR (HG) 32S PAR (HH) 38S PAR Folder and file information: FASTA folder - 2 folders containing multi loci DNA sequences of all the sampled individuals from 9 populations sorted by Population and Subpopulation (individual host mussel) Arlequin input files (16S) folder - input files used for calculation molecular indices of 16S gene at two levels of Population and Subpopulation Arlequin input files (Funtional genes, Subpopulation) folder - input files used for calculation molecular indices of functional genes at level of Subpopulation (individual host mussel) Input files (Functional genetic data, Population) folder - input files used for calculation of molecular indices of functional genes at level of population, synonymous/nonsynonymous substitutions estimation, symbiont isolation-by-distance test, and nucleotide substitution rate, generating haplotype networks of functional genes Polymorphic tables.xlsx - Polymorphic table of 16S and functional genes used in this study

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