ORF prediction

TransDecoder (https://transdecoder.github.io/) was used to predict the open reading frames (ORFs) and translate proteins, and homology searches against pFam and Uniprot databases were performed as supporting evidence for the ORFs. The ORFs with fewer than 30 amino acids were discarded.

Bibliographic Details
Main Authors: Tong, Guang-Xiang, Xu, Wei, Zhang, Yong-Quan, Zhang, Qing-Yu, Yin, Jia-Sheng, Kuang, Youyi
Format: Dataset
Language:unknown
Published: Dryad Digital Repository 2017
Subjects:
RNA-Seq
comparative transcript analysis
positive selection
microsatellite markers
Hucho taimen
Online Access:https://dx.doi.org/10.5061/dryad.9gd3n/8
http://datadryad.org/resource/doi:10.5061/dryad.9gd3n/8
Description
Summary:TransDecoder (https://transdecoder.github.io/) was used to predict the open reading frames (ORFs) and translate proteins, and homology searches against pFam and Uniprot databases were performed as supporting evidence for the ORFs. The ORFs with fewer than 30 amino acids were discarded.

Similar Items