Puncher_2019_NorthernSpawningCod_240IND_5077SNP

Genepop file containing genotypes (5,077 SNPs) of 240 adult Atlantic Cod (Gadus morhua) captured in the Northeastern Atlantic Ocean (2J3KL4VX). DNA was prepared using a ddRAD protocol and 125PE sequenced 60-96 individuals/lane on an Illumina HiSeq2500. SNPs were selected using STACKS and various sof...

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Bibliographic Details
Main Authors: Puncher, Gregory N., Rowe, Sherrylynn, Rose, George A., Leblanc, Nathalie M., Parent, Geneviève J., Wang, Yanjun, Pavey, Scott A.
Format: Dataset
Language:unknown
Published: Dryad Digital Repository 2019
Subjects:
population structure
linkage groups
single nucleotide polymorphisms
chromosomal inversions
Canada
Labrador Sea
Atlantic Ocean
Gadus morhua
atlantic cod
Online Access:https://dx.doi.org/10.5061/dryad.98sp59j/1
https://datadryad.org/resource/doi:10.5061/dryad.98sp59j/1
Description
Summary:Genepop file containing genotypes (5,077 SNPs) of 240 adult Atlantic Cod (Gadus morhua) captured in the Northeastern Atlantic Ocean (2J3KL4VX). DNA was prepared using a ddRAD protocol and 125PE sequenced 60-96 individuals/lane on an Illumina HiSeq2500. SNPs were selected using STACKS and various software described in "Chromosomal inversions in the Atlantic cod genome: implications for management of Canada’s Northern cod stock." Please refer to publication for individual codes.

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