Data from: Using linkage maps as a tool to determine patterns of chromosome synteny in the genus Salvelinus ...
Next generation sequencing techniques have revolutionized the collection of genome and transcriptome data from non-model organisms. This manuscript details the application of restriction site associated DNA sequencing (RADseq) to generate a marker dense genetic map for Brook trout (Salvelinus fontin...
| Main Authors: | , , , |
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| Format: | Dataset |
| Language: | English |
| Published: |
Dryad
2018
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| Subjects: | |
| Online Access: | https://dx.doi.org/10.5061/dryad.75mt7 https://datadryad.org/stash/dataset/doi:10.5061/dryad.75mt7 |
| Summary: | Next generation sequencing techniques have revolutionized the collection of genome and transcriptome data from non-model organisms. This manuscript details the application of restriction site associated DNA sequencing (RADseq) to generate a marker dense genetic map for Brook trout (Salvelinus fontinalis). The consensus map was constructed from three full-sib families totaling 176 F1 individuals. The map consisted of 42 linkage groups with a total female map size of 2502.5 cM, and a total male map size of 1863.8 cM. Synteny was confirmed with Atlantic salmon for 38 linkage groups, with Rainbow trout for 37 linkage groups, Arctic char for 36 linkage groups, and with a previously published Brook trout linkage map for 39 linkage groups. Comparative mapping confirmed the presence of eight metacentric and 34 acrocentric chromosomes in Brook trout. Six metacentric chromosomes seem to be conserved with Arctic char suggesting there have been at least two species specific fusion and fission events within the genus ... : family3quality filtered single-end 100 base pair reads sequenced using RADseq (SbfI digest).family_3.zipfamily2Quality filtered Single end 100base pair reads sequenced using RADseq (SbfI digest).family 2.zipfamily1Quality filtered 100 base pair reads sequenced with RADseq (SbfI digest).family 1.zip ... |
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