SNP VCF file
VCF file containing info for SNPs called using the getsnpsfrommpileup.pl script. Settings used were: coverage >= 10, freq. of minor allele >= 0.2, read support for minor allele >= 3, number of alleles = 2. All SNPs were also verified using the program SysCall, and were retained only if the...
Main Authors: | , , , , |
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Format: | Dataset |
Language: | unknown |
Published: |
Dryad Digital Repository
2013
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Subjects: | |
Online Access: | https://dx.doi.org/10.5061/dryad.606j6/2 http://datadryad.org/resource/doi:10.5061/dryad.606j6/2 |
Summary: | VCF file containing info for SNPs called using the getsnpsfrommpileup.pl script. Settings used were: coverage >= 10, freq. of minor allele >= 0.2, read support for minor allele >= 3, number of alleles = 2. All SNPs were also verified using the program SysCall, and were retained only if the posterior probability of being a variant was >= 0.95. |
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