SNP VCF file

VCF file containing info for SNPs called using the getsnpsfrommpileup.pl script. Settings used were: coverage >= 10, freq. of minor allele >= 0.2, read support for minor allele >= 3, number of alleles = 2. All SNPs were also verified using the program SysCall, and were retained only if the...

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Bibliographic Details
Main Authors: Malenfant, René M., Coltman, David W., Richardson, Evan S., Lunn, Nicholas J., Davis, Corey S.
Format: Dataset
Language:unknown
Published: Dryad Digital Repository 2013
Subjects:
Conservation Genetics
Ecological Genetics
Mammals
Climate Change
Population Genetics - Empirical
Quantitative Genetics
Wapusk National Park
Churchill
Manitoba
Canada
Cenozoic
Ursus maritimus
Ursidae
Caniformia
Carnivora
Eutheria
Mammalia
Animalia
Wapusk national park
Online Access:https://dx.doi.org/10.5061/dryad.606j6/2
http://datadryad.org/resource/doi:10.5061/dryad.606j6/2
Description
Summary:VCF file containing info for SNPs called using the getsnpsfrommpileup.pl script. Settings used were: coverage >= 10, freq. of minor allele >= 0.2, read support for minor allele >= 3, number of alleles = 2. All SNPs were also verified using the program SysCall, and were retained only if the posterior probability of being a variant was >= 0.95.

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