SNP array data including linked loci (7,783 SNPs)

SNP array data of 527 Atlantic cod (Gadus morhua), genotyped at 7,783 loci (dataset including linked SNPs). Genepop format (http://genepop.curtin.edu.au/help_input.html): first line: datafile information; second line: loci names (dbSNP accession numbers); line 3-543 genotypes for each locus (01=A, 0...

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Bibliographic Details
Main Authors: Barth, Julia, Berg, Paul, Jonsson, Per, Bonanomi, Sara, Corell, Hanna, Hemmer-Hansen, Jakob, Jakobsen, Kjetill S., Johannesson, Kerstin, Jorde, Per, Knutsen, Halvor, Moksnes, Per-Olav, Star, Bastiaan, Stenseth, Nils, Svedäng, Henrik, Jentoft, Sissel, André, Carl
Format: Dataset
Language:unknown
Published: Dryad Digital Repository 2017
Subjects:
Population Divergence
Gene Flow
Ecological Adaptation
Chromosomal Inversion
Biophysical Modeling
North Sea
Skagerrak
Kattegat
western Baltic Sea
Gadus morhua
atlantic cod
Online Access:https://dx.doi.org/10.5061/dryad.3f1c8/1
http://datadryad.org/resource/doi:10.5061/dryad.3f1c8/1
Description
Summary:SNP array data of 527 Atlantic cod (Gadus morhua), genotyped at 7,783 loci (dataset including linked SNPs). Genepop format (http://genepop.curtin.edu.au/help_input.html): first line: datafile information; second line: loci names (dbSNP accession numbers); line 3-543 genotypes for each locus (01=A, 02=C, 03=G, 04=T), one individual per row, sampling sites are separated by “pop”. All SNPs are referred to by their database of Single Nucleotide Polymorphisms (dbSNP) accession numbers, available from: http://www.ncbi.nlm.nih.gov/SNP. First three characters of individual names correspond to population IDs: ENG, English Channel; NOR, North Sea; TVE, Tvedestrand; SOP, Soppekilen; HEL, Hellefjord; FRI/GRE, Grenland; OSL, Oslofjord; IDD, Iddefjord; SKA, Skagerrak; GUL, Gullmarsfjord; HAV, Havstensfjord; KAT, Kattegat; ORE, Öresund; BEL, Belt Sea.

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