Pipelines for transcriptome analyses conducted as part of "Community context and pCO2 impact the transcriptome of the "helper" bacterium Alteromonas in co-culture with picocyanobacteria" ...
Pipelines for transcriptome analyses conducted as part of "Community context and pCO2 impact the transcriptome of the "helper" bacterium Alteromonas in co-culture with picocyanobacteria" (Barreto Filho et al., 2022). The provided code, documentation, input and out...
Main Authors: | , , , |
---|---|
Format: | Dataset |
Language: | English |
Published: |
Biological and Chemical Oceanography Data Management Office (BCO-DMO)
2022
|
Subjects: | |
Online Access: | https://dx.doi.org/10.26008/1912/bco-dmo.881942.1 https://hdl.handle.net/1912/29467 |
id |
ftdatacite:10.26008/1912/bco-dmo.881942.1 |
---|---|
record_format |
openpolar |
spelling |
ftdatacite:10.26008/1912/bco-dmo.881942.1 2023-05-15T17:51:11+02:00 Pipelines for transcriptome analyses conducted as part of "Community context and pCO2 impact the transcriptome of the "helper" bacterium Alteromonas in co-culture with picocyanobacteria" ... Morris, James Jeffrey Barreto Filho, Marcelo Malisano Zhiying, Lu Walker, Melissa 2022 https://dx.doi.org/10.26008/1912/bco-dmo.881942.1 https://hdl.handle.net/1912/29467 en eng Biological and Chemical Oceanography Data Management Office (BCO-DMO) http://lod.bco-dmo.org/id/dataset/881942 http://www.ncbi.nlm.nih.gov/bioproject/PRJNA377729 http://lod.bco-dmo.org/id/dataset/881942 http://www.ncbi.nlm.nih.gov/bioproject/PRJNA377729 https://dx.doi.org/10.1038/ismej.2017.189 https://dx.doi.org/10.1093/nar/gkm321 Creative Commons Attribution 4.0 International https://creativecommons.org/licenses/by/4.0/legalcode cc-by-4.0 ocean acidification picocyanobacteria Alteromonas gene expression dataset Dataset 2022 ftdatacite https://doi.org/10.26008/1912/bco-dmo.881942.110.1038/ismej.2017.18910.1093/nar/gkm321 2023-04-03T13:13:05Z Pipelines for transcriptome analyses conducted as part of "Community context and pCO2 impact the transcriptome of the "helper" bacterium Alteromonas in co-culture with picocyanobacteria" (Barreto Filho et al., 2022). The provided code, documentation, input and output files include all the information needed to replicate our findings. The following results abstract describes these data along with related datasets which can be accessed from the "Related Datasets" section of this page. Many microbial photoautotrophs depend on heterotrophic bacteria for accomplishing essential functions. Environmental changes, however, could alter or eliminate such interactions. We investigated the effects of changing pCO2 on gene expression in co-cultures of 3 strains of picocyanobacteria (Synechococcus strains CC9311 and WH8102 and Prochlorococcus strain MIT9312) paired with the ‘helper’ bacterium Alteromonas macleodii EZ55. Co-culture with cyanobacteria resulted in a much ... Dataset Ocean acidification DataCite Metadata Store (German National Library of Science and Technology) |
institution |
Open Polar |
collection |
DataCite Metadata Store (German National Library of Science and Technology) |
op_collection_id |
ftdatacite |
language |
English |
topic |
ocean acidification picocyanobacteria Alteromonas gene expression |
spellingShingle |
ocean acidification picocyanobacteria Alteromonas gene expression Morris, James Jeffrey Barreto Filho, Marcelo Malisano Zhiying, Lu Walker, Melissa Pipelines for transcriptome analyses conducted as part of "Community context and pCO2 impact the transcriptome of the "helper" bacterium Alteromonas in co-culture with picocyanobacteria" ... |
topic_facet |
ocean acidification picocyanobacteria Alteromonas gene expression |
description |
Pipelines for transcriptome analyses conducted as part of "Community context and pCO2 impact the transcriptome of the "helper" bacterium Alteromonas in co-culture with picocyanobacteria" (Barreto Filho et al., 2022). The provided code, documentation, input and output files include all the information needed to replicate our findings. The following results abstract describes these data along with related datasets which can be accessed from the "Related Datasets" section of this page. Many microbial photoautotrophs depend on heterotrophic bacteria for accomplishing essential functions. Environmental changes, however, could alter or eliminate such interactions. We investigated the effects of changing pCO2 on gene expression in co-cultures of 3 strains of picocyanobacteria (Synechococcus strains CC9311 and WH8102 and Prochlorococcus strain MIT9312) paired with the ‘helper’ bacterium Alteromonas macleodii EZ55. Co-culture with cyanobacteria resulted in a much ... |
format |
Dataset |
author |
Morris, James Jeffrey Barreto Filho, Marcelo Malisano Zhiying, Lu Walker, Melissa |
author_facet |
Morris, James Jeffrey Barreto Filho, Marcelo Malisano Zhiying, Lu Walker, Melissa |
author_sort |
Morris, James Jeffrey |
title |
Pipelines for transcriptome analyses conducted as part of "Community context and pCO2 impact the transcriptome of the "helper" bacterium Alteromonas in co-culture with picocyanobacteria" ... |
title_short |
Pipelines for transcriptome analyses conducted as part of "Community context and pCO2 impact the transcriptome of the "helper" bacterium Alteromonas in co-culture with picocyanobacteria" ... |
title_full |
Pipelines for transcriptome analyses conducted as part of "Community context and pCO2 impact the transcriptome of the "helper" bacterium Alteromonas in co-culture with picocyanobacteria" ... |
title_fullStr |
Pipelines for transcriptome analyses conducted as part of "Community context and pCO2 impact the transcriptome of the "helper" bacterium Alteromonas in co-culture with picocyanobacteria" ... |
title_full_unstemmed |
Pipelines for transcriptome analyses conducted as part of "Community context and pCO2 impact the transcriptome of the "helper" bacterium Alteromonas in co-culture with picocyanobacteria" ... |
title_sort |
pipelines for transcriptome analyses conducted as part of "community context and pco2 impact the transcriptome of the "helper" bacterium alteromonas in co-culture with picocyanobacteria" ... |
publisher |
Biological and Chemical Oceanography Data Management Office (BCO-DMO) |
publishDate |
2022 |
url |
https://dx.doi.org/10.26008/1912/bco-dmo.881942.1 https://hdl.handle.net/1912/29467 |
genre |
Ocean acidification |
genre_facet |
Ocean acidification |
op_relation |
http://lod.bco-dmo.org/id/dataset/881942 http://www.ncbi.nlm.nih.gov/bioproject/PRJNA377729 http://lod.bco-dmo.org/id/dataset/881942 http://www.ncbi.nlm.nih.gov/bioproject/PRJNA377729 https://dx.doi.org/10.1038/ismej.2017.189 https://dx.doi.org/10.1093/nar/gkm321 |
op_rights |
Creative Commons Attribution 4.0 International https://creativecommons.org/licenses/by/4.0/legalcode cc-by-4.0 |
op_doi |
https://doi.org/10.26008/1912/bco-dmo.881942.110.1038/ismej.2017.18910.1093/nar/gkm321 |
_version_ |
1766158243730554880 |