Pipelines for transcriptome analyses conducted as part of "Community context and pCO2 impact the transcriptome of the "helper" bacterium Alteromonas in co-culture with picocyanobacteria" ...

• Main Authors: Morris, James Jeffrey, Barreto Filho, Marcelo Malisano, Zhiying, Lu, Walker, Melissa
• Format: Dataset
• Language: English
• Published: Biological and Chemical Oceanography Data Management Office (BCO-DMO) 2022
• Subjects: ocean acidification; picocyanobacteria; Alteromonas; gene expression; Ocean acidification
• Online Access: https://dx.doi.org/10.26008/1912/bco-dmo.881942.1; https://hdl.handle.net/1912/29467

Pipelines for transcriptome analyses conducted as part of "Community context and pCO2 impact the transcriptome of the "helper" bacterium Alteromonas in co-culture with picocyanobacteria" (Barreto Filho et al., 2022). The provided code, documentation, input and output files include all the information needed to replicate our findings. The following results abstract describes these data along with related datasets which can be accessed from the "Related Datasets" section of this page. Many microbial photoautotrophs depend on heterotrophic bacteria for accomplishing essential functions. Environmental changes, however, could alter or eliminate such interactions. We investigated the effects of changing pCO2 on gene expression in co-cultures of 3 strains of picocyanobacteria (Synechococcus strains CC9311 and WH8102 and Prochlorococcus strain MIT9312) paired with the ‘helper’ bacterium Alteromonas macleodii EZ55. Co-culture with cyanobacteria resulted in a much ...