FAIRsharing record for: SalmoBase ... : SalmoBase ...
This FAIRsharing record describes: SalmoBase is an integrated molecular resource for Salmonid species which includes visualizations and analytic tools. The genome of the Atlantic salmon (Salmo salar) has undergone extensive restructuring since a whole genome duplication event ~80 million years ago,...
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| Format: | Dataset |
| Language: | unknown |
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FAIRsharing
2018
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| Online Access: | https://dx.doi.org/10.25504/fairsharing.97kzl6 https://fairsharing.org/FAIRsharing.97kZl6 |
| Summary: | This FAIRsharing record describes: SalmoBase is an integrated molecular resource for Salmonid species which includes visualizations and analytic tools. The genome of the Atlantic salmon (Salmo salar) has undergone extensive restructuring since a whole genome duplication event ~80 million years ago, which creates opportunities to explore the evolutionary process of rediploidization. A public genome assembly is available and ordered into 29 chromosome files. SalmoBase includes a GBrowse interface for exploring the chromosome sequence as well as BLAST functionality and links to expression levels, gene and SNP information. Using public RNAseq data 37,000 high confidence protein coding genes have been identified, wherein almost half show splice variants. ... : The source of this description is the metadata record on FAIRsharing.org, an educational and informative resource that describes and links databases, standards, and data policies. FAIRsharing also creates collections of these resources and recommendations of databases and standards based on 3rd party data policies. ... |
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