A new high throughput sequencing assay for characterising the diversity of natural Vibrio communities and its application to a Pacific oyster mortality event - data analysis workflow

A new high throughput sequencing approach targeting the heat shock protein (hsp60) as a phylogenetic marker was developed to more precisely discriminate members of the Vibrio genus in environmental samples. There is a need for an accurate high throughput assay for defining Vibrio community compositi...

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Main Author: King, William
Format: Text
Language:unknown
Published: Open Science Framework 2021
Subjects:
Pacific
Pacific oyster
Online Access:https://dx.doi.org/10.17605/osf.io/yxjtu
https://osf.io/yxjtu/
id ftdatacite:10.17605/osf.io/yxjtu
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spelling ftdatacite:10.17605/osf.io/yxjtu 2023-05-15T17:54:17+02:00 A new high throughput sequencing assay for characterising the diversity of natural Vibrio communities and its application to a Pacific oyster mortality event - data analysis workflow King, William 2021 https://dx.doi.org/10.17605/osf.io/yxjtu https://osf.io/yxjtu/ unknown Open Science Framework https://dx.doi.org/10.3389/fmicb.2019.02907 Text Pre-registration article-journal ScholarlyArticle 2021 ftdatacite https://doi.org/10.17605/osf.io/yxjtu https://doi.org/10.3389/fmicb.2019.02907 2021-11-05T12:55:41Z A new high throughput sequencing approach targeting the heat shock protein (hsp60) as a phylogenetic marker was developed to more precisely discriminate members of the Vibrio genus in environmental samples. There is a need for an accurate high throughput assay for defining Vibrio community composition in natural samples and this Vibrio-centric hsp60 sequencing assay offers the potential for precise high throughput characterisation of Vibrio diversity, providing an enhanced platform for dissecting Vibrio dynamics in the environment. Associated publication DOI: 10.3389/fmicb.2019.02907 Text Pacific oyster DataCite Metadata Store (German National Library of Science and Technology) Pacific
institution Open Polar
collection DataCite Metadata Store (German National Library of Science and Technology)
op_collection_id ftdatacite
language unknown
description A new high throughput sequencing approach targeting the heat shock protein (hsp60) as a phylogenetic marker was developed to more precisely discriminate members of the Vibrio genus in environmental samples. There is a need for an accurate high throughput assay for defining Vibrio community composition in natural samples and this Vibrio-centric hsp60 sequencing assay offers the potential for precise high throughput characterisation of Vibrio diversity, providing an enhanced platform for dissecting Vibrio dynamics in the environment. Associated publication DOI: 10.3389/fmicb.2019.02907
format Text
author King, William
spellingShingle King, William
A new high throughput sequencing assay for characterising the diversity of natural Vibrio communities and its application to a Pacific oyster mortality event - data analysis workflow
author_facet King, William
author_sort King, William
title A new high throughput sequencing assay for characterising the diversity of natural Vibrio communities and its application to a Pacific oyster mortality event - data analysis workflow
title_short A new high throughput sequencing assay for characterising the diversity of natural Vibrio communities and its application to a Pacific oyster mortality event - data analysis workflow
title_full A new high throughput sequencing assay for characterising the diversity of natural Vibrio communities and its application to a Pacific oyster mortality event - data analysis workflow
title_fullStr A new high throughput sequencing assay for characterising the diversity of natural Vibrio communities and its application to a Pacific oyster mortality event - data analysis workflow
title_full_unstemmed A new high throughput sequencing assay for characterising the diversity of natural Vibrio communities and its application to a Pacific oyster mortality event - data analysis workflow
title_sort new high throughput sequencing assay for characterising the diversity of natural vibrio communities and its application to a pacific oyster mortality event - data analysis workflow
publisher Open Science Framework
publishDate 2021
url https://dx.doi.org/10.17605/osf.io/yxjtu
https://osf.io/yxjtu/
geographic Pacific
geographic_facet Pacific
genre Pacific oyster
genre_facet Pacific oyster
op_relation https://dx.doi.org/10.3389/fmicb.2019.02907
op_doi https://doi.org/10.17605/osf.io/yxjtu
https://doi.org/10.3389/fmicb.2019.02907
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