6. Ecological genomics of the Northern krill: Genome-scale variation ...
This item holds multiple tar archives with genome-scale genetic variation data for the Northern krill, ranging from VCF files with SNP and genotypes to results of population genetic analyses, including estimates of the levels of genetic variation, allele-frequencies and divergence, and extended hapl...
| Main Authors: | , |
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| Format: | Dataset |
| Language: | unknown |
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SciLifeLab
2024
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| Online Access: | https://dx.doi.org/10.17044/scilifelab.22806255 https://figshare.scilifelab.se/articles/dataset/6_Ecological_genomics_of_the_Northern_krill_Genome-scale_variation/22806255 |
| Summary: | This item holds multiple tar archives with genome-scale genetic variation data for the Northern krill, ranging from VCF files with SNP and genotypes to results of population genetic analyses, including estimates of the levels of genetic variation, allele-frequencies and divergence, and extended haplotype signatures. Depending on estimate, they are given on a per-SNP or per-window basis. Genome chunks Because of the large genome (>19 Gb) and number of SNPs (>750 M), these data were typically produced in chunks. Based on preliminary mappings of RNA-seq data, scaffolds/contigs were divided into two groups: those containing expressed genes ("gene-rich sequences") or those that did not ("gene-poor sequences"). Each group was divided into 80 chunks of approximately the same length across the genome. Chunks are numbered from 1 to 80 and follow the sorting order of the genome assembly: chunks with low numbers contain data across longer but fewer sequences. Population definitions The population genetic data was ... |
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