4. Ecological genomics of the Northern krill: Genome-wide signatures of DNA methylation ...
This item holds gzipped files and archives with CpG DNA methylation data inferred from signal analysis of Nanopore reads. The files represent increasingly processed methylation data, most of which is contained in tab-separated TSV/CSV spreadsheets. Methylation was detected using the tool f5c and pro...
| Main Authors: | , |
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| Format: | Dataset |
| Language: | unknown |
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SciLifeLab
2024
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| Online Access: | https://dx.doi.org/10.17044/scilifelab.22786928 https://figshare.scilifelab.se/articles/dataset/4_Ecological_genomics_of_the_Northern_krill_Genome-wide_signatures_of_DNA_methylation/22786928 |
| Summary: | This item holds gzipped files and archives with CpG DNA methylation data inferred from signal analysis of Nanopore reads. The files represent increasingly processed methylation data, most of which is contained in tab-separated TSV/CSV spreadsheets. Methylation was detected using the tool f5c and program and format documentation can be found at: https://github.com/hasindu2008/f5c Archive contents: methylation_calls.tsv.gz , first-step output from "f5c_x86_64_linux_cuda call-methylation", containing per-read methylation calls. methylation_calls_freq.tsv.gz , second-step output from "f5c_x86_64_linux_cuda meth-freq", containing per-CpG-group methylation frequencies from overlapping reads. methylation_calls_freq.annotated_all_cpg_sites.tsv.gz , per-CpG-site methylation calls (74.8 M) cross-referenced with genomic regions (e.g. intergenic, intron, CDS) based on genome annotation. methylation_calls_freq.annotated_repeated_cpg_sites.tsv.gz , per-CpG-site methylation calls cross-referenced with genomic regions as ... |
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