Seawater carbonate chemistry and expression of c-Fos protein in the brain of marine medaka
Altered behaviors have been reported in many marine fish following exposure to high CO2 concentrations. However, the mechanistic link between elevated CO2 and activation of brain regions in fish is unknown. Herein, we examined the relative quantification and location of c-Fos expression in marine me...
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2020
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ftdatacite:10.1594/pangaea.920009 2023-05-15T17:51:06+02:00 Seawater carbonate chemistry and expression of c-Fos protein in the brain of marine medaka Wang, Xiaojie Lv, Yutao Xie, Jinling Li, Baolin Zhou, Tangjian Chen, Yaqi Chen, Yi Song, Jiakun 2020 text/tab-separated-values https://dx.doi.org/10.1594/pangaea.920009 https://doi.pangaea.de/10.1594/PANGAEA.920009 en eng PANGAEA - Data Publisher for Earth & Environmental Science https://CRAN.R-project.org/package=seacarb https://dx.doi.org/10.1016/j.scitotenv.2020.137279 https://CRAN.R-project.org/package=seacarb Creative Commons Attribution 4.0 International https://creativecommons.org/licenses/by/4.0/legalcode cc-by-4.0 CC-BY Animalia Behaviour Bottles or small containers/Aquaria <20 L Chordata Coast and continental shelf Gene expression incl. proteomics Laboratory experiment Nekton North Pacific Oryzias melastigma Pelagos Single species Temperate Type Species Registration number of species Uniform resource locator/link to reference Treatment Experiment duration Time in minutes pH pH, standard deviation Gene expression Gene expression, standard deviation Time point, descriptive Proportion of time Proportion, standard deviation Speed, swimming Speed, swimming, standard deviation Salinity Partial pressure of carbon dioxide water at sea surface temperature wet air Partial pressure of carbon dioxide, standard deviation Temperature, water Temperature, water, standard deviation Alkalinity, total Alkalinity, total, standard deviation Carbonate system computation flag Carbon dioxide Fugacity of carbon dioxide water at sea surface temperature wet air Bicarbonate ion Carbonate ion Carbon, inorganic, dissolved Aragonite saturation state Calcite saturation state Calculated using CO2SYS Potentiometric titration Potentiometric Calculated using seacarb after Nisumaa et al. 2010 Ocean Acidification International Coordination Centre OA-ICC dataset Dataset 2020 ftdatacite https://doi.org/10.1594/pangaea.920009 https://doi.org/10.1016/j.scitotenv.2020.137279 2021-11-05T12:55:41Z Altered behaviors have been reported in many marine fish following exposure to high CO2 concentrations. However, the mechanistic link between elevated CO2 and activation of brain regions in fish is unknown. Herein, we examined the relative quantification and location of c-Fos expression in marine medaka following acute (360 min) and short-term (7 d) exposure to CO2-enriched water (1000 ppm and 1800 ppm CO2). In the control and two treatment groups, pH was stable at 8.21, 7.92 and 7.64, respectively. After acute exposure to seawater acidified by enrichment with CO2, there was a clear upregulation of c-Fos protein in the medaka brain (P : In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2019) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2020-07-07. Dataset Ocean acidification DataCite Metadata Store (German National Library of Science and Technology) Pacific |
institution |
Open Polar |
collection |
DataCite Metadata Store (German National Library of Science and Technology) |
op_collection_id |
ftdatacite |
language |
English |
topic |
Animalia Behaviour Bottles or small containers/Aquaria <20 L Chordata Coast and continental shelf Gene expression incl. proteomics Laboratory experiment Nekton North Pacific Oryzias melastigma Pelagos Single species Temperate Type Species Registration number of species Uniform resource locator/link to reference Treatment Experiment duration Time in minutes pH pH, standard deviation Gene expression Gene expression, standard deviation Time point, descriptive Proportion of time Proportion, standard deviation Speed, swimming Speed, swimming, standard deviation Salinity Partial pressure of carbon dioxide water at sea surface temperature wet air Partial pressure of carbon dioxide, standard deviation Temperature, water Temperature, water, standard deviation Alkalinity, total Alkalinity, total, standard deviation Carbonate system computation flag Carbon dioxide Fugacity of carbon dioxide water at sea surface temperature wet air Bicarbonate ion Carbonate ion Carbon, inorganic, dissolved Aragonite saturation state Calcite saturation state Calculated using CO2SYS Potentiometric titration Potentiometric Calculated using seacarb after Nisumaa et al. 2010 Ocean Acidification International Coordination Centre OA-ICC |
spellingShingle |
Animalia Behaviour Bottles or small containers/Aquaria <20 L Chordata Coast and continental shelf Gene expression incl. proteomics Laboratory experiment Nekton North Pacific Oryzias melastigma Pelagos Single species Temperate Type Species Registration number of species Uniform resource locator/link to reference Treatment Experiment duration Time in minutes pH pH, standard deviation Gene expression Gene expression, standard deviation Time point, descriptive Proportion of time Proportion, standard deviation Speed, swimming Speed, swimming, standard deviation Salinity Partial pressure of carbon dioxide water at sea surface temperature wet air Partial pressure of carbon dioxide, standard deviation Temperature, water Temperature, water, standard deviation Alkalinity, total Alkalinity, total, standard deviation Carbonate system computation flag Carbon dioxide Fugacity of carbon dioxide water at sea surface temperature wet air Bicarbonate ion Carbonate ion Carbon, inorganic, dissolved Aragonite saturation state Calcite saturation state Calculated using CO2SYS Potentiometric titration Potentiometric Calculated using seacarb after Nisumaa et al. 2010 Ocean Acidification International Coordination Centre OA-ICC Wang, Xiaojie Lv, Yutao Xie, Jinling Li, Baolin Zhou, Tangjian Chen, Yaqi Chen, Yi Song, Jiakun Seawater carbonate chemistry and expression of c-Fos protein in the brain of marine medaka |
topic_facet |
Animalia Behaviour Bottles or small containers/Aquaria <20 L Chordata Coast and continental shelf Gene expression incl. proteomics Laboratory experiment Nekton North Pacific Oryzias melastigma Pelagos Single species Temperate Type Species Registration number of species Uniform resource locator/link to reference Treatment Experiment duration Time in minutes pH pH, standard deviation Gene expression Gene expression, standard deviation Time point, descriptive Proportion of time Proportion, standard deviation Speed, swimming Speed, swimming, standard deviation Salinity Partial pressure of carbon dioxide water at sea surface temperature wet air Partial pressure of carbon dioxide, standard deviation Temperature, water Temperature, water, standard deviation Alkalinity, total Alkalinity, total, standard deviation Carbonate system computation flag Carbon dioxide Fugacity of carbon dioxide water at sea surface temperature wet air Bicarbonate ion Carbonate ion Carbon, inorganic, dissolved Aragonite saturation state Calcite saturation state Calculated using CO2SYS Potentiometric titration Potentiometric Calculated using seacarb after Nisumaa et al. 2010 Ocean Acidification International Coordination Centre OA-ICC |
description |
Altered behaviors have been reported in many marine fish following exposure to high CO2 concentrations. However, the mechanistic link between elevated CO2 and activation of brain regions in fish is unknown. Herein, we examined the relative quantification and location of c-Fos expression in marine medaka following acute (360 min) and short-term (7 d) exposure to CO2-enriched water (1000 ppm and 1800 ppm CO2). In the control and two treatment groups, pH was stable at 8.21, 7.92 and 7.64, respectively. After acute exposure to seawater acidified by enrichment with CO2, there was a clear upregulation of c-Fos protein in the medaka brain (P : In order to allow full comparability with other ocean acidification data sets, the R package seacarb (Gattuso et al, 2019) was used to compute a complete and consistent set of carbonate system variables, as described by Nisumaa et al. (2010). In this dataset the original values were archived in addition with the recalculated parameters (see related PI). The date of carbonate chemistry calculation by seacarb is 2020-07-07. |
format |
Dataset |
author |
Wang, Xiaojie Lv, Yutao Xie, Jinling Li, Baolin Zhou, Tangjian Chen, Yaqi Chen, Yi Song, Jiakun |
author_facet |
Wang, Xiaojie Lv, Yutao Xie, Jinling Li, Baolin Zhou, Tangjian Chen, Yaqi Chen, Yi Song, Jiakun |
author_sort |
Wang, Xiaojie |
title |
Seawater carbonate chemistry and expression of c-Fos protein in the brain of marine medaka |
title_short |
Seawater carbonate chemistry and expression of c-Fos protein in the brain of marine medaka |
title_full |
Seawater carbonate chemistry and expression of c-Fos protein in the brain of marine medaka |
title_fullStr |
Seawater carbonate chemistry and expression of c-Fos protein in the brain of marine medaka |
title_full_unstemmed |
Seawater carbonate chemistry and expression of c-Fos protein in the brain of marine medaka |
title_sort |
seawater carbonate chemistry and expression of c-fos protein in the brain of marine medaka |
publisher |
PANGAEA - Data Publisher for Earth & Environmental Science |
publishDate |
2020 |
url |
https://dx.doi.org/10.1594/pangaea.920009 https://doi.pangaea.de/10.1594/PANGAEA.920009 |
geographic |
Pacific |
geographic_facet |
Pacific |
genre |
Ocean acidification |
genre_facet |
Ocean acidification |
op_relation |
https://CRAN.R-project.org/package=seacarb https://dx.doi.org/10.1016/j.scitotenv.2020.137279 https://CRAN.R-project.org/package=seacarb |
op_rights |
Creative Commons Attribution 4.0 International https://creativecommons.org/licenses/by/4.0/legalcode cc-by-4.0 |
op_rightsnorm |
CC-BY |
op_doi |
https://doi.org/10.1594/pangaea.920009 https://doi.org/10.1016/j.scitotenv.2020.137279 |
_version_ |
1766158116440768512 |