nuc rDNA ITS1-5.8S-ITS2 region (ITS) sequences of 33 haplotypes (14 for U. antarctica and 19 for U. aurantiacoatra) with sampling locality information ...

nuc rDNA ITS1-5.8S-ITS2 region (ITS) sequences of 33 haplotypes (14 for U. antarctica and 19 for U. aurantiacoatra) deposited also in Genbank (ID MG200275 - MG200307). The ITS sequences were amplified using primers ITS1F (Gardes and Bruns, 1993) and ITS4 (White et al., 1990). The total alignment was...

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Bibliographic Details
Main Author: Lagostina, Elisa
Format: Dataset
Language:English
Published: PANGAEA 2018
Subjects:
Sample ID
Latitude of event
Longitude of event
Date/Time of event
Species
Continent
Area/locality
Name
Code
Uniform resource locator/link to file
Biological sample
Priority Programme 1158 Antarctic Research with Comparable Investigations in Arctic Sea Ice Areas SPP1158
Arctic
Antarctic
Bruns
Antarc*
Antarctica
Sea ice
Online Access:https://dx.doi.org/10.1594/pangaea.892969
https://doi.pangaea.de/10.1594/PANGAEA.892969
Description
Summary:nuc rDNA ITS1-5.8S-ITS2 region (ITS) sequences of 33 haplotypes (14 for U. antarctica and 19 for U. aurantiacoatra) deposited also in Genbank (ID MG200275 - MG200307). The ITS sequences were amplified using primers ITS1F (Gardes and Bruns, 1993) and ITS4 (White et al., 1990). The total alignment was 666 bp long and included an intron of 216 bp length 226 bp from the 3' end of the small subunit of the ribosomal RNA. Our alignment included 33 polymorphic sites, 15 of them in the intron. The dataset was used to generate and haplotype network. ...

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