Occurrence Download
A dataset containing 179207 species occurrences available in GBIF matching the query: { "TaxonKey" : [ "is Archaea" ] } The dataset includes 179207 records from 280 constituent datasets: 183 records from gas hydrate bearing sediment Raw sequence reads. 552 records from Microbial...
| Main Author: | |
|---|---|
| Format: | Dataset |
| Language: | unknown |
| Published: |
The Global Biodiversity Information Facility
2019
|
| Subjects: | |
| Online Access: | https://dx.doi.org/10.15468/dl.xjgum6 https://www.gbif.org/occurrence/download/0022044-190918142434337 |
| Summary: | A dataset containing 179207 species occurrences available in GBIF matching the query: { "TaxonKey" : [ "is Archaea" ] } The dataset includes 179207 records from 280 constituent datasets: 183 records from gas hydrate bearing sediment Raw sequence reads. 552 records from Microbial community structure is affected by cropping sequences and bio-covers under long-term no-tillage. 2 records from Xylophaga in situ Eclusion Experiment. 61 records from Marine metagenome ICM_LCR. 252 records from marine metagenome Raw sequence reads. 522 records from archaeal community in Haima cold seep in SCS. 19 records from 16S rRNA metagenomic investigation of arsenotrophic bacteriome of ground water and soil from arsenic-prone area of Bangladesh. 7 records from Microcosms Metagenome. 5274 records from Effects of organic matter manipulation on archaeal, bacterial, and fungal community assembly. 64 records from Archaea Collection in BCRC. 211 records from SCS SEATS Raw sequence reads. 538 records from This workpackage details only the prokaryote (Archaea and Bacteria) analyses for the MicroPolar project.. 150 records from Microbial communities associated with ferromanganese nodules and the surrounding sediments. 34 records from Seawater Metagenome. 1 records from Botany (UPS). 7 records from Marine Metagenome. 8 records from DSMZ Bacteria. 85 records from photoautotrophic_biofilm. 1 records from Marine Biological Sample Database, JAMSTEC. 15 records from Sea water sample Targeted Locus (Loci). 127 records from Bacterial 16S rRNA gene sequencing of Antarctic soil. 6 records from Atlantic salmon microbiota. 38 records from Water and Sediment samples Targeted loci environmental. 57 records from Microbial indicators of anthropogenic marine pollution identified by 16S and 18S metagenomic library analysis. 422 records from Microbial diversity in the Tongyeong-Geoje coastal area of Korea. 19 records from IFO Bacteria database. 1 records from nifH diversity in the North Pacific Ocean. 482 records from It was verified the impact of irrigation treatments (wet, optimal, dry and very dry) and three potato cultivars on soil microbial community.. 643 records from Microbial community structure and dynamics in the oxygen minimum zone of the Northeast subarctic Pacific Ocean. 1 records from 16S rRNA metagenomic investigation of arsenotrophic bacteriome of ground water and soil from arsenic-prone area of Bangladesh. 10 records from Microbial Diversity in Antarctic marine sediments (Admiralty Bay and Bransfield Strait). 7 records from Microbial induced mineral precipitations caused by nitrate treatment for souring control during microbial enhanced oil recovery (MEOR). 3 records from Bacteria Collection in BCRC. 50 records from Trichodesmium spiralis associated microbiome Targeted loci. 889 records from North Pacific Subtropical Gyre Microbial Community. 100 records from Seawater Targeted Locus (Loci). 895 records from Macroalgal Morphology affects composition and settlement of microbial communities. 265 records from Microbial diversity in the Tongyeong-Geoje coastal area of Korea. 8 records from Marine Water Column Samples Targeted loci environmental. 103 records from INVESTIGATING THE MICROBIAL EUKARYOTIC COMMUNITIES IN THE SURFACE WATERS OF THE ARAFURA SEA AND CORAL SEA. 33 records from Microbial associations in temperate marine copepods from the Gulf of Maine. 97 records from Bacterial communities from the water column and the surface sediments along a transect in the East Sea (Sea of Japan). 5 records from Ecología de comunidades microbianas en las aguas subterráneas de Cuatrociénegas, Coahuila. 589 records from Marine metagenome Targeted loci environmental. 66 records from Prokaryotic community response to microalgal lysates. 166 records from Baltic Sea high-frequency temporal study 2012 at the Linnaeus Microbial Observatory Targeted Locus (Loci). 348 records from Effect of size fractionation and DNA extraction on the diversity and composition of prokaryotic and eukaryotic plankton community. 369 records from resuscitation mechanisms during enrichment culture. 110 records from Diet analysis of Japanese sardine and Pacific round herring larvae. 742 records from Bacterial Diversity in the East China Sea. 104 records from Limited influence of primary treated sewage waters on bacterial abundance, production and community composition in coastal seawaters. 180 records from marine sediment metagenome Raw sequence reads. 4 records from Comparative study in validity of three regions of 18S-rRNA for eukaryote amplicon sequence analyses. 48 records from Species-specific associations between bacterioplankton and photosynthetic picoeukaryotes. 561 records from Impact of a major inflow event on the composition and distribution of bacterioplankton communities in the Baltic Sea. 590 records from Microbial community in marine sediments. 60 records from Oceanic microplankton do not adhere to the latitudinal diversity gradient. 43 records from Spirulina necromass degradartion in arctic marine sediments. 2 records from Japan Collection of Microorganisms(Bacteria). 21 records from Antarctic Snow Algae 2014/15 16S and 18S Illumina Seq of snow algae communities around Ryder Bay, Antarctica. 182 records from Equatorial Pacific Ocean Targeted loci environmental. 91 records from suspended particulate matter Raw sequence reads. 3 records from CARBOM cruise 2013 flow cytometry sorted phytoplankton. 1014 records from Bacteria exposure experiment North Sea. 150 records from Microbial Processes and Biodiversity: OCEAN. 3460 records from EMOSE (2017) Inter-Comparison of Marine Plankton Metagenome Analysis Methods. 63 records from marine sediment metagenome Raw sequence reads. 180 records from Groundwater microbiome. 61 records from the assembly of abundant and rare bacterioplankton subcommunities in three subtropical bays. 604 records from Extracellular DNA marine sediment Targeted Locus (Loci). 180 records from Reciprocal transplantation experiment of salt marsh sediments Targeted loci. 248 records from MiSeq 16S rRNA gene (prokaryotic 16S rRNA gene) sequences of 16 SCS sediments. 306 records from IMPACT OF SAHARAN DUST DEPOSITION ON BACTERIOPLANKTON IN MARINE SURFACE WATER. 22 records from CCA_pathobiome. 802 records from Little Sippewissett Marsh Targeted Locus (Loci). 36 records from Ocean sediment-basement interface Targeted Locus (Loci). 129 records from Aarhus Bay sediment PCR amplified product sequencing. 11 records from 3Soil16S. 430 records from Standard filtration practices significantly distort planktonic microbial diversity estimates. 380 records from Marine sediment Raw sequence reads. 10 records from Soil DNA extracted from Robinson Ridge, East Antarctica Raw sequence reads. 109 records from Bacterial diversity in snow from mid-latitude mountain areas: Alps, Eastern Anatolia, Karakoram and Himalaya.. 1 records from Mount Hope Bay bacteria Targeted Locus (Loci). 57 records from Sediment Microcosm Metagenome. 1314 records from Microbial diversity in the Benguela coastal upwelling system as derived from 16S rRNA sequencing and RNA Stable Isotope Probing (SIP). 57 records from A practical introduction to microbial molecular ecology through the use of iChips. 738 records from Bacterias y Arqueas de la transición Andino-Amazónica del departamento del Caquetá - Proyecto Colombia BIO. 4342 records from Yarwun Port Curtis Sediment Bacterial 16S rRNA (V6) 454 sequence. 1133 records from Mariana and Kermadec Trench sediment 16S rRNA gene sequencing. 204 records from Bacterial communitiy compositions on natural and artificial substrates in the Spermonde Archipelago, Indonesia. 475 records from ADDOMEx. 358 records from Microbial diversity in the Tongyeong-Geoje coastal area of Korea2. 191 records from Marine bacteria metagenome. 84 records from Submarine Ligurian Canyons Water Prokaryotic and Protist Communities. 7 records from Environmental zooplankton Targeted Locus (Loci). 139 records from Mediterranean Contaminated Pelagic communities. 366 records from ADDOMEx Tier 3 Experiments: Mesocosm Si with Gulf of Mexico coastal waters. 246 records from 16S rRNA amplicon from marine Bacteria Raw sequence reads. 8 records from Biodiversidad microbiana de los ecosistemas marinos en la Isla Cayo Serrana durante la Expedición Seaflower 2016 - Proyecto Colombia BIO. 18 records from Genebank, National Institute of Agrobiological Sciences. 57 records from Diversity of microbial community (bacteria, micro-eukaryotes and fungi) in the Passage of Lascaux Cave.. 1011 records from Marine Sediment from the Berkeley Bay Targeted Locus (Loci). 702 records from Hydrate Ridge, OR - Deep sea cold seep ecosystem Targeted Locus (Loci). 24 records from CABI Bioscience Fungus Collection. 62 records from Archaea Collection in BCRC. 4 records from envinronment Metagenome. 145 records from marine Archaea metagenome. 29 records from Centre de Ressources Biologiques de l'Institut Pasteur. 448 records from Pelagic Gulf of Mexico Targeted loci environmental. 97 records from Shotgun Metagenomic Sequencing of the Arctic Ocean during Winter-Spring Transition. 6 records from VAG Mine Pit Pond Metagenome. 204 records from Gulf of Mexico open ocean Targeted Locus (Loci). 311 records from 16S amplicons Subtropical Frontal Zone New Zealand. 23 records from Comparison of copper contaminated soils, with similar uncontaminated controls.. 184 records from Sea water microorganisms Raw sequence reads. 210 records from Taxonomic study of endospores in a marine sediment. 283 records from 16S data describing Antarctic benthic sediment. 435 records from Northern Gulf of Mexico Hypoxia can Alter Sediment Communities of Nitrifying Archaea. 76 records from Distribution and composition of thiotrophic mats in the hypoxic zone of the Black Sea (150-170m water depth, Crimea margin). 20 records from ocean bacteria Metagenomic assembly. 3 records from Manchester Museum, University of Manchester, Botany Collection. 310 records from Nutrient addition mesocosm experiment Targeted Locus (Loci). 1 records from Eukaryotic natural population from Northern Baffin Bay - Raw sequence reads. 1259 records from Marine methane seep Targeted Locus (Loci). 4645 records from Zostera Marina Ammonification environmental. 190 records from Blue Mountains Swamp Archaea. 113 records from Biogeography of pelagic bacterioplankton across an antagonistic temperature-salinity gradient in the Red Sea. 66 records from Archaea Arctic Ocean Survey Targeted Locus (Loci). 2833 records from Bacterial 16s Amplicon Sequencing of the Atlantic Ocean. 3443 records from Geographically tagged INSDC sequences. 13 records from Dissolved compounds excreted by copepods reshape the diversity and the activity of marine bacterioplankton community. 8 records from Marine metagenome ICM_AWP. 18 records from Microbial eukaryotes. 278 records from Temporal dynamics of the particle-attached and free-living microbial communities from coastal seawater. 152 records from Microbial communities in marine surface water. 80 records from Marine sediment metagenome ICM_FIS. 168 records from Gulf Oil Spill underwater oil plume samples Targeted Locus (Loci). 302 records from Abundance, diversity and distribution of Legionellales in wet environments in Sweden. 33 records from Diet analysis of Pacific Bluefin Tuna larvae. 491 records from Sea spray aerosols at Three California Beaches. 1 records from Diesel contamination of Antarctic soils and sediments. 240 records from Southern Ocean microorganisms Targeted Locus (Loci). 13 records from Ocean Acidification baceria sample Targeted loci environmental. 55 records from Southern Ocean. 21 records from Metabolically active microbial communities in marine sediment under high-CO2 and low-pH extremes. 19 records from Global Ocean Sampling Expedition. 25 records from Effect of genetics and environment on gut bacteria in Anopheles and Aedes mosquitoes.. 2 records from Ocean Water Metagenome. 30 records from Bacterial communities in sandy sediment at submarine volcanic vents off Panarea Island (Italy). 64 records from Marine metagenome ICM_JRV. 546 records from Microbial biogeography of French caves. 440 records from Caspian Sea Sediment - 16S Survey Targeted Locus (Loci). 2547 records from DEEPEND: Microbiome and bacterioplankton rRNA gene sequence data collected from Gulf of Mexico seawater samples. Cruises DP03 and DP04 from Jan 2016 - December 2016. 1791 records from Short-term interaction of pyrene and cadmium in prokaryotic community in coastal sediment microcosms. 1 records from Bacterial community dynamics during polysaccharide degradation at contrasting sites in the Southern and Atlantic Oceans. 10606 records from Nahant Collection. 148 records from US East Coast Salt Marshes Targeted Locus (Loci). 105 records from aquatic bacterial metagenome Raw sequence reads. 2 records from Mediterranean Bathypelagic Habitat. 24 records from rDNA amplicon sequencing of Western North Atlantic microbial community. 231 records from Marine sediment metagenome ICM_GMS. 510 records from Variations in prokaryotic community assembly and predicted metabolic potential of surface sediments with geography in the coastal northern Zhejiang, East China Sea. 6 records from Bacteria Collection in BCRC. 253 records from Zooplankton communities in the coastal water of northeastern Hokkaido. 47 records from Metagenetic analysis of the 18S nuclear small subunit ribosomal RNA gene of a mixed zooplankton assemblage was carried out using the 454 pyrosequencing platform.. 139 records from CTD water column metabarcoding. 1 records from International Collection of Microorganisms from Plants (ICMP). 1 records from Baselines Initiative 16S rRNA gene dataset: Baselines Amplicon Release 1 (R1) Indian Ocean 2015. 4 records from Mesocosm Targeted Locus (Loci). 621 records from Comparative 16S analysis of hydrothermal vent samples from the Mid-Atlantic Ridge (MAR). 402 records from Northern Gulf of Mexico Hypoxic Zone Raw sequence reads. 90 records from Whale fall. 37 records from Microbial diversity of marine sediments from Ross Sea. 1 records from 16S and 18S sequences from the epiphytic biofilm on leaves of Enhalus acroides. 5 records from Colección de Microorganismos-Pontificia Universidad Javeriana. 768 records from Seasonal and spatial diversity of bacterial communities in marine sediments of Ningbo Xiangshan Coastal Ocean. 2 records from Microbial diversity associated with copepods in the North Atlantic subtropical gyre. 2 records from Bacterial diversity in the South Adriatic Sea during winter of 2016. 146 records from marine sediment metagenome Raw sequence reads. 125 records from Archaea diversity in marine sediment. 1350 records from Polymetallic nodule field Targeted loci environmental. 844 records from Po river Prodelta and Mar Piccolo of Taranto surface sediments bacterial communities targeted loci. 661 records from eDNA_Subseafloor. 261 records from Abyssal Baseline Study & Geophysical Survey (ABYSSLINE 02)_AB01_Re-sequenced Targeted loci environmental. 209 records from Marine methane seep Targeted Locus (Loci). 975 records from marine sediment metagenome Metagenome. 1 records from UK coast natural seawater Genome sequencing. 522 records from Incubation of marine methane seep sediments with a bioorthogonal amino acid. 12 records from 16S rRNA sequences of bacterioplankton spatial distributions in the Baltic Proper. 1020 records from Queensland Marine Sediment. 183 records from marine sediment metagenome Raw sequence reads. 3 records from Intertidal Mixing Zone Targeted Locus (Loci). 1 records from Deposit_of_Patent_Bio-Material_in_BCRC. 1 records from Metagenomic sequence from soil bacteria. 440 records from Effects of Fecal Input, Environmental Conditions, and Environmental Sources on Enterococci Concentrations in an Estuarine Ecosystem. 65 records from Deep mud-volcano biosphere in the Nankai accretionary wedge. 173 records from Pelagic Microbiome: viruses to protists. 16S and 18S data from oceanic samples collected at the chlorophyll maximum.. 126 records from Metagenome data from DNA stable isotope probing of Stiffkey saltmarsh sediment microcosms to investigate methanogenesis from choline. 329 records from Patagonian fjord prokaryote community. 7 records from CECT Spanish Type Culture Collection(Bacteria). 236 records from water Raw sequence reads. 25 records from A Method for Studying Protistan Diversity Using Massively Parallel Sequencing of V9 Hypervariable Regions of Small-Subunit Ribosomal RNA Genes. 2 records from Amundsen Gulf Overwintering Eukaryote Community. 42 records from Hydrothermal Deposit Targeted Locus (Loci). 15 records from Anammox bacteria in sediment cores of Daya Bay, China. 181 records from Studies of marine microbial dark matter. 22 records from Bacteria in domestic water-storage containers with or without mosquito larvae. 364 records from Microbiome profiling Schlöppnerbrunnen peat cores from different depths. 1703 records from Community structure of Archaea in the western North Pacific and the Arctic Ocean. 109 records from marine sediment metagenome Targeted loci environmental. 15 records from Distinctive community structure and high diversity in particle-associated prokaryotes in tropical and subtropical Pacific Ocean surface seawater. 1 records from Diversity and structure of benthic bacterial community from South-Eastern Pacific Ocean, Targeted Locus (Loci). 1 records from iNaturalist Research-grade Observations. 1 records from BCCM/LMG Bacteria collection. 595 records from DSMZ Prokarya Collection Catalogue. 497 records from Santa Monica Basin seep sediment incubations to assess C and N sources for F430 synthesis. 527 records from dsrB sequencing of sulfate-reducing microbial communities in Skagerrak and Baltic sediment. 5050 records from Amplicon sequencing of Tara Oceans DNA samples corresponding to size fractions for protists.. 6625 records from Coral. 530 records from Microbial Biogeography and Potential Ecological Function Deep Indian Ocean Ridge. 269 records from Comparison of marine sediments from the Beguela upwelling zone. 1936 records from 16S Amplicon Data from an Antarctic Cold Seep. 334 records from Coastal seawater influenced by the municipal effluents Raw sequence reads. 5 records from White sea picoplankton Metagenome. 3 records from Type Localities for organisms and fossils first described from Antarctica. 64 records from Baltic Sea. 11 records from Transplant and re-transplant microcosms of Baltic Proper and Bothnian Sea bacterioplankton Targeted Locus (Loci). 337 records from A long-standing complex tropical dipole shapes marine microbial biogeography. 140 records from Shotgun metagenomic analysis of Lake Paajarvi sediment microbes.. 141 records from Archaea. 2681 records from marine sediment metagenome Metagenome. 745 records from Biological rejuvenation of iron oxides in bioturbated marine sediments. 118 records from Amplicon sequencing of Tara Oceans RNA samples corresponding to size fractions for protists.. 281 records from Arctic Ocean. 25 records from Distributions and Abundances of Sublineages of the N2-Fixing Cyanobacterium Candidatus Atelocyanobacterium thalassa (UCYN-A) in the Noumea Lagoon. 7 records from Life in a toxic environment. 13401 records from MICROBIS database. 1 records from Marine metagenome ICM_VAG. 106 records from Ocean crust Targeted Locus (Loci). 825 records from Sediment surface microbial community changes due to phytoplankton addition. 14 records from marine metagenome Targeted Locus (Loci). 95 records from Green Edge microcosms Raw sequence reads. 95 records from Global Malaspina 2010 deep ocean expedition - rRNA pyrotags. 127 records from Marine subseafloor sediment Targeted Locus (Loci). 120 records from Cascading influence of inorganic nitrogen sources on DOM production composition lability and microbial community structure in the open ocean. 1 records from peptide incubation in GOM C6 seawater bacteria Metagenome. 12 records from Porcupine Seabight 16S Ribosomal RNA. 97 records from Municipal Pensacola Beach Sand Metagenome. 503 records from Soil microbial response to organic disturbances. 1061 records from marine sediment metagenome Targeted loci environmental. 44029 records from Marine metagenomes Metagenome. 172 records from Nuunat- ORMS formation during oil biodegradation at low temperature. 116 records from Red Sea Zooplankton Raw sequence reads. 768 records from Diversity of archaeal and bacterial 16S rRNA gene in marine sediment in Aarhus Bay. 202 records from Red Sea microbial plankton Raw sequence reads. 1 records from De novo whole metagenome sequencing studies. 941 records from Development and validation of a multi-trophic metabarcoding biotic index for benthic organic enrichment biomonitoring using a salmon farm case-study.. 270 records from Thermophilic endospores in temperate sediments. 273 records from Diversity and abundance of Bathyarchaeota (MCG) in South China Sea sediments and the implication of its ecological roles. 785 records from Bacterial Biogeography of Coastal Water in the Northern East China Sea. 190 records from Nitrate-storing microorganisms in sediments of the Bornholm Basin. 368 records from 16S_Sediment_Bolinao. 1139 records from Heterogeneity of methane seep microbiomes in the NE Pacific. 85 records from Biological Resource Center, Department of Biotechnology, National Institute of Technology and Evaluation. 523 records from Diversity of SE Pacific benthic Bacteria and Archaea communities Targeted Locus (Loci). 506 records from Japan Collection of Microorganisms, RIKEN BioResource Center. 550 records from Mediterranean mud volcano flow Targeted loci. 5878 records from SCHEMA_Sediment. 61 records from ATCC Bacteria Collection Catalog. 314 records from South China Sea interfaces 16S amplicon sequencing. 72 records from Marine metagenome ICM_GPS. 1 records from CCUG Microorganisms databases(Bacteria). 2 records from Microbial diversity studies of Arabian Sea sediment. 387 records from Dark ocean microbial diversity. 247 records from Sediment Metagenome. 301 records from Metagenomes of Sediments from Red Sea Atlantis II and Discovery Deep Brine Pools. 161 records from Metagenomic investigation of six depths from the anchialine Bundera sinkhole. 293 records from marine sediment metagenome Targeted loci environmental. 17 records from Sediment bacteria in the Southern Ocean. 9 records from Prospecting of extreme microbial ecosystems associated to minerals (microbialites, microbial mats and endoevaporites) in Puna, Wetlands and Salars of Argentina, Chile and Bolivia. Data from some individual datasets included in this download may be licensed under less restrictive terms. |
|---|