Occurrence Download
A dataset containing 68574 species occurrences available in GBIF matching the query: { "TaxonKey" : [ "is one of (Cenarchaeum W.u.Preston, Molinski & De Long, 1996, Cenarchaeum symbiosum W.u.Preston, Molinski & De Long, 1996, Nitrosopumilaceae, Nitrosopumilus Könneke, Bernhard...
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| Format: | Dataset |
| Language: | unknown |
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The Global Biodiversity Information Facility
2020
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| Online Access: | https://dx.doi.org/10.15468/dl.ejsqmw https://www.gbif.org/occurrence/download/0047665-200613084148143 |
| Summary: | A dataset containing 68574 species occurrences available in GBIF matching the query: { "TaxonKey" : [ "is one of (Cenarchaeum W.u.Preston, Molinski & De Long, 1996, Cenarchaeum symbiosum W.u.Preston, Molinski & De Long, 1996, Nitrosopumilaceae, Nitrosopumilus Könneke, Bernhard, de la Torre, Walker, Waterbury & Stahl, 2005, Nitrosopumilus maritimus Könneke, Bernhard, de la Torre, Walker, Waterbury & Stahl, 2005, Thermoplasmataceae, Thermoplasma Darland et al., 1970, Thermoplasma acidophilum Darland et al., 1970, Picrophilaceae, Picrophilus Schleper et al., 1996, Ferroplasmaceae, Thermococcaceae, Pyrococcus Fiala & Stetter, 1986, Pyrococcus yayanosii Birrien et al., 2011, Pyrococcus woesei Zillig, 1988, Pyrococcus horikoshii González et al., 1999, Pyrococcus glycovorans Barbier et al., 1999, Pyrococcus abyssi Erauso, Reysenbach, Godfroy, Meunier, Crump, Partensky, Baross, Marteinsson, Barbier, Pace & Prieur, 1993, Pyrococcus furiosus Fiala & Stetter, 1986, Palaeococcus Takai, Sugai, Itoh & Horikoshi, 2000, Palaeococcus helgesonii Amend et al., 2006, Palaeococcus ferrophilus Takai et al., 2000, Thermococcus Zillig, 1983, Thermococcus thioreducens Pikuta et al., 2007, Thermococcus stetteri Miroshnichenko, 1990, Thermococcus siculi Grote et al., 2000, Thermococcus profundus Kobayashi & Horikoshi, 1995, Thermococcus peptonophilus González et al., 1996, Thermococcus onnurineus Bae, Kim, Yang, Lim, Heon, Lee, Kang, Kim & Lee, 2006, Thermococcus radiotolerans Jolivet, Corre, L'Haridon, Forterre & Prieur, 2004, Thermococcus marinus Jolivet, Corre, L'Haridon, Forterre & Prieur, 2004, Thermococcus litoralis Neuner et al., 2001, Thermococcus hydrothermalis Godfroy et al., 1997, Thermococcus pacificus Miroshnichenko et al., 1998, Thermococcus gorgonarius Miroshnichenko et al., 1998, Thermococcus gammatolerans Jolivet et al., 2003, Thermococcus fumicolans Godfroy & Meunier, 1996, Thermococcus coalescens Kuwabara et al., 2005, Thermococcus chitonophagus Huber & Stetter, 1996, Thermococcus celericrescens Kuwabara et al., 2007, Thermococcus barossii Duffaud et al., 2005, Thermococcus barophilus Marteinsson et al., 1999, Thermococcus atlanticus Cambon-Bonavita et al., 2004, Thermococcus alcaliphilus Keller et al., 1997, Thermococcus guaymasensis Canganella et al., 1998, Thermococcus aggregans Canganella et al., 1998, Thermococcus aegaeus Arab et al., 2000, Thermococcus acidaminovorans Dirmeier et al., 2001, Methanopyraceae, Methanosarcinaceae, Methanohalobium Zhilina & Zavarzin, 1988, Methanohalobium evestigatum Zhilina & Zavarzin, 1988, Methanosarcina Kluyver & van Niel, 1936, Methanosarcina siciliae Elberson & Sowers, 1997, Methanosarcina mazei (Barker, 1936) Mah & Kuhn, 1984, Methanosarcina baltica von Klein et al., 2002, Methanosarcina acetivorans Sowers et al., 1986, Methanosarcina barkeri Schnellen, 1947, Methanococcoides Sowers & Ferry, 1985, Methanococcoides methylutens Sowers & Ferry, 1985, Methanococcoides alaskense Singh et al., 2005, Methanolobus König & Stetter, 1983, Methanolobus taylorii Oremland & Boone, 1994, Methanolobus bombayensis Kadam et al., 1994, Methanolobus siciliae Stetter & König, 1989, Methanosaetaceae, Methanosaeta Patel & Sprott, 1990, Methanospirillaceae, Methanospirillum Ferry et al., 1974, Methanomicrobiaceae, Methanolacinia Zellner et al., 1990, Methanolacinia paynteri (Rivard et al., 1984) Zellner et al., 1990, Methanofollis Zellner et al., 1999, Methanofollis formosanus Wu et al., 2005, Methanofollis aquaemaris Lai & Chen, 2001, Methanoplanus Wildgruber et al., 1984, Methanoplanus petrolearius Ollivier et al., 1998, Methanoplanus endosymbiosus van Bruggen et al., 1986, Methanogenium Romesser et al., 1981, Methanogenium frigidum Franzmann et al., 1997, Methanogenium marinum Chong et al., 2003, Methanogenium cariaci Romesser et al., 1981, Methanogenium boonei Kendall, Wardlaw, Tang, Bonin, Liu & Valentine, 2007, Methanoculleus Maestrojuán et al., 1990, Methanoculleus submarinus Mikucki et al., 2003, Methanoculleus marisnigri (Romesser et al., 1981) Maestrojuán et al., 1990, Methanocorpusculaceae, Methanocorpusculum Zellner et al., 1988, Methanococcaceae, Methanothermococcus Whitman, 2002, Methanothermococcus thermolithotrophicus (Huber et al., 1984) Whitman, 2002, Methanothermococcus okinawensis Takai et al., 2002, Methanococcus Kluyver & van Niel, 1936, Methanococcus voltae Balch & Wolfe, 1981, Methanococcus vannielii Stadtman & Barker, 1951, Methanococcus maripaludis Jones et al., 1984, Methanococcus aeolicus Kendall et al., 2006, Methanocaldococcaceae, Methanotorris Whitman, 2002, Methanotorris igneus (Burggraf et al., 1990) Whitman, 2002)" ] } The dataset includes 68574 records from 541 constituent datasets: 163 records from Comparative 16S analysis of hydrothermal vent samples from the Mid-Atlantic Ridge (MAR). 2 records from Mesocosm Targeted Locus (Loci). 129 records from Northern Gulf of Mexico Hypoxic Zone Raw sequence reads. 11 records from Whale fall. 3 records from Prince Edward Island marine metgenome Raw sequence reads. 21 records from Microbial communities of methane seeps in shallow, porous sands off Elba. 254 records from Seasonal and spatial diversity of bacterial communities in marine sediments of Ningbo Xiangshan Coastal Ocean. 475 records from Polymetallic nodule field Targeted loci environmental. 43 records from Archaea diversity in marine sediment. 17 records from microbial communities in long-term e-waste contaminated river sediments. 15 records from XRCWU sediment metagenome Metagenome. 1 records from Impact of offshore oil drilling operations on the diversity of marine benthic Foraminifera - Raw sequence reads. 300 records from Po river Prodelta and Mar Piccolo of Taranto surface sediments bacterial communities targeted loci. 113 records from eDNA_Subseafloor. 77 records from Abyssal Baseline Study & Geophysical Survey (ABYSSLINE 02)_AB01_Re-sequenced Targeted loci environmental. 273 records from marine sediment metagenome Metagenome. 44 records from Marine methane seep Targeted Locus (Loci). 133 records from Incubation of marine methane seep sediments with a bioorthogonal amino acid. 11 records from Diversity and abundance of Bathyarchaeota (MCG) in South China Sea sediments and the implication of its ecological roles. 8 records from A comparison of microbial community composition in four contrasting sediments in the Celtic Sea. 12 records from SOLA Raw sequence reads. 11 records from May 2013 DNA-SIP marine seawater bacteria metagenomic assembly. 72 records from Exploring Fronts With Multiple Robots Schmidt Ocean Institute Cruise to the Pacific Ocean in 2018. 59 records from North Sea plastic incubation and reference communities, raw sequence reads. 99 records from seawater metagenome. 2 records from Global Ocean Sampling Expedition. 93 records from Evidence of bacterioplankton community adaption in responses to long-term mariculture disturbance. 9 records from Bacterial communities in sandy sediment at submarine volcanic vents off Panarea Island (Italy). 14 records from Marine metagenome ICM_JRV. 16 records from particle-attached and free-living bacteria kongsfjorden. 41 records from Guaymas Basin and Sonora Margin sediment Targeted loci. 42 records from Saltern of Margherita di Savoia Metagenome. 5 records from Microbial community structures of chimney in DODO and Solitaire hydrothermal fields. 726 records from DEEPEND: Microbiome and bacterioplankton rRNA gene sequence data collected from Gulf of Mexico seawater samples. Cruises DP03 and DP04 from Jan 2016 - December 2016. 1 records from Bacterial community dynamics during polysaccharide degradation at contrasting sites in the Southern and Atlantic Oceans. 5 records from sediment microorganism Metagenome. 59 records from Marine sediment metagenome ICM_GMS. 87 records from Zooplankton communities in the coastal water of northeastern Hokkaido. 18 records from Metagenetic analysis of the 18S nuclear small subunit ribosomal RNA gene of a mixed zooplankton assemblage was carried out using the 454 pyrosequencing platform.. 68 records from permafrost metagenome Targeted loci environmental. 55 records from CTD water column metabarcoding. 36 records from Lakes ediments of the Amazon River system Raw sequence reads. 39 records from marine sediment metagenome Raw sequence reads. 8 records from Microbial diversity. 17 records from XRU sediment metagenome Metagenome. 2 records from Surface water bacteria Targeted Locus (Loci). 14 records from 16S rRNA Analysis of Osaka Bay Microbiomes. 13 records from BES pyrosequencing. 8 records from Eukaryotic diversity in Central Park. 145 records from Patagonian fjord prokaryote community. 55 records from Metagenome data from DNA stable isotope probing of Stiffkey saltmarsh sediment microcosms to investigate methanogenesis from choline. 2 records from Amundsen Gulf Overwintering Eukaryote Community. 22 records from Microbial diversity in four Mediterranean irciniid sponges. 652 records from Marine metagenomes from the bioGEOTRACES project. 69 records from Studies of marine microbial dark matter. 1 records from Bacteria in domestic water-storage containers with or without mosquito larvae. 41 records from Qinghai Lake sediments Metagenome. 79 records from Microbiome profiling Schlöppnerbrunnen peat cores from different depths. 128 records from microbial community diversities of Tuosu Lake. 115 records from dsrB sequencing of sulfate-reducing microbial communities in Skagerrak and Baltic sediment. 113 records from Santa Monica Basin seep sediment incubations to assess C and N sources for F430 synthesis. 766 records from Amplicon sequencing of Tara Oceans DNA samples corresponding to size fractions for protists.. 189 records from Microbial Biogeography and Potential Ecological Function Deep Indian Ocean Ridge. 40 records from Amino acid addition experiment Metagenome. 57 records from Comparison of marine sediments from the Beguela upwelling zone. 653 records from 16S Amplicon Data from an Antarctic Cold Seep. 213 records from Temporal sampling of marine metagenomes from Station ALOHA and BATS. 2 records from Type Localities for organisms and fossils first described from Antarctica. 21 records from Baltic Sea. 4 records from Comparative metagenome analysis of normal and arsenic contaminated soils from ballia district, Uttar Pradesh, India. 38 records from Soil marker gene sequences across the Nutrient Network. 11 records from Marine sediment metagenome ICM_DSE. 5 records from Metagenomic approach for studying picoeukaryotes in a extreme oligotrophic marginal sea (South Adriatic Sea) during winter mixed conditions. 41 records from mangrove rhizosphere sediment Metagenome Raw sequence reads. 15 records from sediment metagenome Raw sequence reads. 19 records from Microbial diversity in shallow water hydrothermal sediments of Gueishan Island, Taiwan. 27 records from Uncultured Environmental Isolate Targeted loci environmental. 2 records from Bayside Harbour, NS, Canada (plankton SSU library 454 sequencing). 16 records from marine sediment Raw sequence reads. 2 records from 16S rRNA gene pyrosequencing and clone library revealed highly diverse microbial communities in natural marine biofilms. 22 records from Amplicon sequencing of Tara Oceans RNA samples corresponding to size fractions for protists.. 1 records from Polyamine-transforming bacterioplankton in seawater. 6 records from Microbial community structure of chronically polluted marine sediments from a cold region of the southern hemisphere. 4 records from Bacterial communities from Thrombolites of Lake Sarmiento. 2 records from DOW-2. 22 records from Ocean crust Targeted Locus (Loci). 2 records from Identification and activity of acetate-assimilating microorganisms in diffuse hydrothermal fluids. 158 records from Microbial community in on-site tsunami sediment caused by the Great East Japan Earthquake. 214 records from Sediment surface microbial community changes due to phytoplankton addition. 188 records from Temporal effect of plant diversity and oiling on nitrogen cycling in marsh sediments. 3 records from Particulate methane monooxygenase diversity on an Arctic shelf. 34 records from Global Malaspina 2010 deep ocean expedition - rRNA pyrotags. 38 records from Sediment samples Raw sequence reads. 184 records from Diversities of bacteria and archaea in Sanya mangrove sediments. 224 records from Microbial communities in the phycosphere environment. 41 records from sediment metagenome Raw sequence reads. 22 records from Seawater metagenome Targeted loci environmental. 79 records from Soil bacterial diversity is associated with human population density in urban greenspaces. 24 records from Effects of triclosan on bacterial community composition in natural seawater microcosms. 100 records from Indian_sediments. 5 records from Porcupine Seabight 16S Ribosomal RNA. 36 records from Municipal Pensacola Beach Sand Metagenome. 1 records from ZRD sediment metagenome Metagenome. 19 records from marine sediment metagenome Raw sequence reads. 10 records from soil bacteria and fungi Targeted loci environmental. 56 records from Nuunat- ORMS formation during oil biodegradation at low temperature. 35 records from Red Sea Zooplankton Raw sequence reads. 6 records from Metagenomics of Ojo de Campo. 4 records from Bacterial community composition in the naturally iron-fertilized region off Kerguelen Island (Southern Ocean). Targeted Locus (Loci). 11 records from Marine waters Raw sequence reads. 74 records from Thermophilic endospores in temperate sediments. 71 records from Diversity and abundance of Bathyarchaeota (MCG) in South China Sea sediments and the implication of its ecological roles. 287 records from Bacterial Biogeography of Coastal Water in the Northern East China Sea. 17 records from seawater metagenome Metagenome. 251 records from Heterogeneity of methane seep microbiomes in the NE Pacific. 189 records from Mediterranean mud volcano flow Targeted loci. 100 records from Japan Collection of Microorganisms, RIKEN BioResource Center. 22 records from ATCC Bacteria Collection Catalog. 43 records from marine sediment metagenome Targeted loci environmental. 32 records from South China Sea interfaces 16S amplicon sequencing. 48 records from Marine sediment metagenome. 9 records from Bacterial community diverisity. 65 records from Metagenomes of Sediments from Red Sea Atlantis II and Discovery Deep Brine Pools. 50 records from Sediment Metagenome. 10 records from Diversity and population structure of Marine Group A in the oxygen minimum zone of the Northeast subarctic Pacific Ocean. 10 records from USS-2. 54 records from marine sediment metagenome Targeted loci environmental. 202 records from Successional trajectories of coastal bacterioplankton communities in response to co-exposure of cadmium and phenanthrene. 20 records from Sea ice and seawater Raw sequence reads. 178 records from Enrichment of abundant sedimentary Bathyarchaeota demonstrating organoautotrophic metabolic capabilities. 9 records from Distinctive Microbial Community Structure in Highly Stratified Deep-Sea Brine Water Columns. 8 records from Microbial diversity of marine sediments from Ross Sea. 21 records from coastal suspended particulate matter North Sea surface Raw sequence reads. 2 records from Colección de Microorganismos-Pontificia Universidad Javeriana. 28 records from marine sediment metagenome Raw sequence reads. 2 records from Bacterial diversity in the South Adriatic Sea during winter of 2016. 252 records from Temperature shifts simulating secondary oil recovery. 2 records from seawater metagenome Metagenome. 1 records from 16S rRNA sequences of bacterioplankton spatial distributions in the Baltic Proper. 5 records from Evaluation of filtration and DNA extraction methods for environmental DNA biodiversity assessments across multiple trophic levels.. 212 records from Queensland Marine Sediment. 44 records from gas hydrate bearing sediment Raw sequence reads. 5 records from Marine sediment amplicon Targeted loci environmental. 11 records from Sediment microbial community Random survey. 24 records from Microbial diversity before and after tidal re-instatement. 22 records from Camargue soil and sediment 16S community profiling. 122 records from Studies on archaeal communities from freshwater sediments based on 16S rRNA gene biomarker. 3 records from ZRM sediment metagenome Metagenome. 86 records from marine metagenome Raw sequence reads. 17 records from Santa Barbara Basin Raw sequence reads. 157 records from archaeal community in Haima cold seep in SCS. 4 records from 16S rRNA metagenomic investigation of arsenotrophic bacteriome of ground water and soil from arsenic-prone area of Bangladesh. 49 records from Microbial communities associated with ferromanganese nodules and the surrounding sediments. 209 records from This workpackage details only the prokaryote (Archaea and Bacteria) analyses for the MicroPolar project.. 23 records from MiSeq 16S rRNA gene (archaeal 16S rRNA gene) sequences of 4 SCS sediments. 7 records from 1)sediments; 2) coral floc Metagenome. 16 records from marine sediment metagenome Raw sequence reads. 9 records from Seawater Metagenome. 23 records from Hot springs Metagenome. 19 records from Natural seawater bacterial community in exopolysaccharides utilization. 56 records from Microbial community in permeable intertidal sediment. 2 records from Marine metagenome ICM_ABR. 6 records from Cave sediment Metagenome. 5 records from photoautotrophic_biofilm. 128 records from PREsediment Targeted Locus (Loci). 45 records from Microbial ecology of archaeal community in sediment from adjacent waters of Rushan Bay. 51 records from MiSeq 16S rRNA gene (archaeal 16S rRNA gene) sequences of 12 SCS sediments. 2 records from Vertical profiles of bacterial community diversity in a drinking water reservoir. 661 records from marine sediment metagenome Targeted Locus (Loci). 1 records from Compost microbe establishment and growth in agricultural soils. 186 records from Microbial community in PAH-contaminated riverine sediments. 6 records from Molecular Characterization of the Structural and Functional Microbial Community in Sediments of a Northern Utah, Basin-Fill Aquifer. 13 records from Marine metagenome ICM_LCR. 3 records from Transitional subsurface-to-surface microbial diversity in a terrestrial serpentinizing seep (Manleluag, Pangasinan, the Philippines). 1256 records from Effects of organic matter manipulation on archaeal, bacterial, and fungal community assembly. 20 records from Archaea Collection in BCRC. 31 records from SCS SEATS Raw sequence reads. 126 records from coastal sediment diversity study. 45 records from marine sediment metagenome Raw sequence reads. 100 records from Bacteria community in the southern East China Sea. 4 records from Metabarcoding surveys of the Arctic marine environment. 6 records from Soil metagenome from healthy and unhealthy agricultural soil. 221 records from Fe3+ and Mn4+ - induced changes in microbial communities of boreal lake sediments. 3 records from Baltic Sea Basin sediments diversity Raw sequence reads. 79 records from Fluctuating redox regimes raw sequence reads. 107 records from Coastal Sediment Bacterial Community Alterations in Association with Sudden Vegetation Dieback. 3 records from Effect of climate-change induced glacier melting on the benthic prokaryotic diversity in the West Antarctic Peninsula. 3 records from DSMZ Bacteria. 1 records from Oxic sediment - Extracellular Metagenome. 34 records from Microbial communities in deep eastern Mediterranean Sea surface sediments. 51 records from Loihi Seamount Targeted loci environmental. 1 records from La Medee sediment - Extracellular Metagenome Metagenome. 3 records from Bacterial 16S rRNA gene sequencing of Antarctic soil. 5 records from It was verified the impact of irrigation treatments (wet, optimal, dry and very dry) and three potato cultivars on soil microbial community.. 2 records from IFO Bacteria database. 41 records from 16s data marine community of L4 station. 20 records from The Indigo Project: a global citizen science Ocean survey. 103 records from pyrosequencing Raw sequence reads of deep-sea Archaea. 193 records from Microbial community structure and dynamics in the oxygen minimum zone of the Northeast subarctic Pacific Ocean. 5 records from Microbial induced mineral precipitations caused by nitrate treatment for souring control during microbial enhanced oil recovery (MEOR). 413 records from Temporal variation in pesticide biodegradation. 62 records from Sediment river Genome sequencing and assembly. 213 records from North Pacific Subtropical Gyre Microbial Community. 24 records from Seawater Targeted Locus (Loci). 304 records from Herbicide-incubated GBR lagoon microbiomes Targeted loci environmental. 253 records from Macroalgal Morphology affects composition and settlement of microbial communities. 15 records from Salt Marsh Sediments Raw sequence reads. 66 records from Arctic microbiome along Svalbard Cross Shelf transects. 130 records from Assessing the effects of salmon farming seabed enrichment using bacterial community diversity and high throughput sequencing. 593 records from Bacerial and archaeal diversity in Central Park. 17 records from INVESTIGATING THE MICROBIAL EUKARYOTIC COMMUNITIES IN THE SURFACE WATERS OF THE ARAFURA SEA AND CORAL SEA. 72 records from Microbial diversity in the Tongyeong-Geoje coastal area of Korea. 18 records from Bacterial communities from the water column and the surface sediments along a transect in the East Sea (Sea of Japan). 214 records from Marine metagenome Targeted loci environmental. 2 records from L''Atalante sediment - Extracellular Metagenome. 118 records from Effect of size fractionation and DNA extraction on the diversity and composition of prokaryotic and eukaryotic plankton community. 64 records from Enhanced pyrene and benzo[a]pyrene degradation by plant root and SMFC. 12 records from XRCWD sediment metagenome Metagenome. 14 records from Marine sediment metagenome ICM_CRS. 21 records from Diet analysis of Japanese sardine and Pacific round herring larvae. 38 records from sediment metagenome Metagenome. 3 records from Comparative study in validity of three regions of 18S-rRNA for eukaryote amplicon sequence analyses. 9 records from Species-specific associations between bacterioplankton and photosynthetic picoeukaryotes. 4 records from Oceanic microplankton do not adhere to the latitudinal diversity gradient. 1 records from Spirulina necromass degradartion in arctic marine sediments. 97 records from Microbial community in marine sediments. 53 records from Targeted loci sequencing of anaerobic benzene-degrading enrichment cultures. 155 records from Biogeography of coastal wetland bacterial communities experiencing sudden vegetation dieoff. 16 records from Ecological Genomics of the Eastern Tropical South Pacific Oxygen Minimum Zone Metagenome. 43 records from Equatorial Pacific Ocean Targeted loci environmental. 31 records from suspended particulate matter Raw sequence reads. 9 records from Localized impact of aquaculture effluent on Red Sea coral reef water nutrients and microorganisms. 929 records from EMOSE (2017) Inter-Comparison of Marine Plankton Metagenome Analysis Methods. 3 records from Vertical stratification of microbial communities in the Red Sea revealed by 16S rDNA pyrosequencing. 284 records from 16S sequencing of environmental samples to test the impact of sediment source. 2 records from Taxonomic composition of microbial communities in coastal Arctic sediments. 6 records from marine sediment metagenome Metagenomic assembly. 38 records from Marine sediment metagenome ICM_CFU. 15 records from Metagenome from mudbank Area,Alappuzha Kerala India. 53 records from Groundwater microbiome. 7 records from Structuring effect of environmental variables on protistan diversity patterns in two anoxic marine basins. 1 records from Reciprocal transplantation experiment of salt marsh sediments Targeted loci. 77 records from MiSeq 16S rRNA gene (prokaryotic 16S rRNA gene) sequences of 16 SCS sediments. 299 records from Composition and Genetic Diversity of Microbial Communities in Subtropical Coastal Wetland Sediments. 108 records from Little Sippewissett Marsh Targeted Locus (Loci). 9 records from Sewer sediments Targeted loci environmental. 28 records from sediment metagenome Metagenome. 23 records from Microbial community diversity in Arctic marine sediments and Planktonic microbial. 1 records from Funtonal metagenomic of salt resistance. 2 records from Ocean sediment-basement interface Targeted Locus (Loci). 48 records from Depth dependent (0-5,000 m) and seasonal variability in archaeal community structure in the subarctic and subtropical western North Pacific.. 29 records from marine sediment metagenome Raw sequence reads. 62 records from Bacterial Biomarkers of Marcellus Shale Activity in Pennsylvania. 2 records from Oil-water intephase microbial community analysis Raw sequence reads. 14 records from Benham Rise 16S raw sequence reads. 33 records from 16S amplicons New Zealand agricultural soils. 492 records from sediment metagenome Raw sequence reads. 6 records from XRM sediment metagenome Metagenome. 387 records from Microbial diversity in the Benguela coastal upwelling system as derived from 16S rRNA sequencing and RNA Stable Isotope Probing (SIP). 7 records from A practical introduction to microbial molecular ecology through the use of iChips. 23 records from Minor impact of ocean acidification to the structure of an Arctic sediment microbial community. 86 records from Bacterial communitiy compositions on natural and artificial substrates in the Spermonde Archipelago, Indonesia. 40 records from Sediment metagenome. 946 records from Yarwun Port Curtis Sediment Bacterial 16S rRNA (V6) 454 sequence. 2044 records from Microbial communities associated with Eurasian watermilfoil, water and sediment. 6 records from water sample Raw sequence reads. 11 records from Metagenomics of Brava and Tebenquiche lakes microbial mats. 15 records from uncultured prokaryote Targeted loci environmental. 60 records from Marine bacteria metagenome. 50 records from Microbial diversity in the Tongyeong-Geoje coastal area of Korea2. 11 records from Shallow-water pockmarks diversity Targeted Locus (Loci). 86 records from Pearl River Estuary sediments Targeted Locus (Loci). 25 records from Submarine Ligurian Canyons Water Prokaryotic and Protist Communities. 55 records from 16S rRNA amplicon from marine Bacteria Raw sequence reads. 3 records from Diversity of microbial community (bacteria, micro-eukaryotes and fungi) in the Passage of Lascaux Cave.. 168 records from Hydrate Ridge, OR - Deep sea cold seep ecosystem Targeted Locus (Loci). 1 records from Amplicon sequences from naphthalene biodegradation in Arctic and temperate seawater. 52 records from Microbial processes in iron-rich sediments of Lake Towuti, Indonesia: Disentangling the methane and iron cycles. 105 records from 16S amplicons Subtropical Frontal Zone New Zealand. 72 records from Gulf of Mexico open ocean Targeted Locus (Loci). 3 records from Comparison of copper contaminated soils, with similar uncontaminated controls.. 4 records from SMAR-T Raw sequence reads. 13 records from Taxonomic study of endospores in a marine sediment. 45 records from Sea water microorganisms Raw sequence reads. 20 records from Marine subseafloor sediment Targeted Locus (Loci). 111 records from Northern Gulf of Mexico Hypoxia can Alter Sediment Communities of Nitrifying Archaea. 20 records from Distribution and composition of thiotrophic mats in the hypoxic zone of the Black Sea (150-170m water depth, Crimea margin). 6 records from ocean bacteria Metagenomic assembly. 3 records from Nutrient addition mesocosm experiment Targeted Locus (Loci). 356 records from Marine methane seep Targeted Locus (Loci). 2 records from Spatial variation of bacterioplankton in south Atlantic Bight. 249 records from Microbial communities associated with Juncus roemerianus and Spartina alterniflora vegetated sediments in Louisiana saltmarshes. 13 records from Microbial community structure or iron oxyhydroxides rich mound in Satsuma Iwo-jima, Japan. 4 records from Characteristics of bacterial communities in the deep sediment Lake Baikal from the regions with oil and gases discharging. 193 records from Tyne oil spill snorkels Raw sequence reads. 1272 records from Zostera Marina Ammonification environmental. 183 records from Organic agricultural field soil Raw sequence reads. 21 records from Archaea Arctic Ocean Survey Targeted Locus (Loci). 629 records from Bacterial 16s Amplicon Sequencing of the Atlantic Ocean. 1429 records from Geographically tagged INSDC sequences. 65 records from Temporal dynamics of bacterioplankton community in response to excessive nitrate loading in the oligotrophic coastal water. 12 records from marine sediment metagenome Raw sequence reads. 1 records from Bacteria Metagenome. 1 records from Niche separation of ammonia-oxidizing archaea by the Kuril Islands in the subarctic Northwestern Pacific. 1 records from Sediment Raw sequence reads. 42 records from Gulf Oil Spill underwater oil plume samples Targeted Locus (Loci). 9 records from Thermokarst ponds Targeted Locus (Loci). 67 records from Abundance, diversity and distribution of Legionellales in wet environments in Sweden. 185 records from Depth profile of ancient sediments. 1 records from Marine Biological Sample Database, JAMSTEC. 1 records from Sea water sample Targeted Locus (Loci). 31 records from surface sediment Raw sequence reads. 24 records from Microbial indicators of anthropogenic marine pollution identified by 16S and 18S metagenomic library analysis. 212 records from Lake sediment sequencing. 1 records from nifH diversity in the North Pacific Ocean. 59 records from Microbial diversity in the Tongyeong-Geoje coastal area of Korea. 15 records from DOS-1. 26 records from Nitrogen cycling microbes in the surface sediments of the South China Sea. 372 records from MiSeq 16S rRNA gene (archaeal 16S rRNA gene) sequences of 33 Mai Po sediments, including 18 samples from winter and 15 samples from summer. 1 records from Microbial Diversity in Antarctic marine sediments (Admiralty Bay and Bransfield Strait). 1 records from 16S marine bacteria Raw sequence reads MEDEA2. 11 records from Trichodesmium spiralis associated microbiome Targeted loci. 3 records from Impact of rainforest transformation on phylogenetic and functional diversity of soil prokaryotic communities in Sumatra (Indonesia). 125 records from Saltern microbial community diversity. 4 records from Microbial associations in temperate marine copepods from the Gulf of Maine. 2 records from Illumina high-throughput sequencing of bacterial community. 10 records from Mudflat sediment Metagenome. 86 records from Baltic Sea high-frequency temporal study 2012 at the Linnaeus Microbial Observatory Targeted Locus (Loci). 9 records from Benthic Ocean Acidification. 10 records from Peru margin subsurface. 18 records from ZRCWD sediment metagenome Metagenome. 22 records from microbial diversity Raw sequence reads. 5 records from Archaeal diversity of surface seawater (A3,A5,G3,G5) Targeted Locus (Loci). 2 records from sea water bacteria Raw sequence reads. 111 records from resuscitation mechanisms during enrichment culture. 62 records from Marine sediment microbial communities in the presence of macrophytes. 1 records from Rifle sediment bacterial community Targeted Locus (Loci). 77 records from California Current System Long Term Ecological Research P1604 (CCS_LTER_P1604) Targeted loci environmental. 13 records from Limited influence of primary treated sewage waters on bacterial abundance, production and community composition in coastal seawaters. 215 records from Bacterial Diversity in the East China Sea. 5 records from CPN Metagenome. 42 records from marine sediment metagenome Raw sequence reads. 180 records from Impact of a major inflow event on the composition and distribution of bacterioplankton communities in the Baltic Sea. 16 records from Bacterial community of cold seeps Metagenome. 3 records from marine metagenome Targeted loci environmental. 13 records from Archaeal diversity of Loki's Castle black smokers at the Arctic Mid-Ocean Ridge. 65 records from Variation in freshwater stream sediment community 16S rRNA profiles along an urbanization gradient. 374 records from Bacteria exposure experiment North Sea. 45 records from Microbial Processes and Biodiversity: OCEAN. 15 records from marine sediment metagenome Raw sequence reads. 47 records from Freshwater sediment Raw sequence reads. 2 records from Oxic sediment - Microbial Metagenome. 3 records from NEON Surface Water Microbe Marker Gene Sequences - 2014. 13 records from the assembly of abundant and rare bacterioplankton subcommunities in three subtropical bays. 8 records from BSM marine Targeted Locus. 138 records from Extracellular DNA marine sediment Targeted Locus (Loci). 43 records from Sediment of acid mine drainage Targeted loci environmental. 27 records from Microbiome variation in Agaricia undata with distinct depth distribution ranges. 124 records from IMPACT OF SAHARAN DUST DEPOSITION ON BACTERIOPLANKTON IN MARINE SURFACE WATER. 85 records from Marine Bacteria 16S V4 Raw sequence reads. 2 records from marine metagenome Targeted Locus (Loci). 61 records from Metagenomics of Jacarepagua Lagoon. 3 records from Aarhus Bay sediment PCR amplified product sequencing. 21 records from Arctic benthos Targeted Locus (Loci). 95 records from Standard filtration practices significantly distort planktonic microbial diversity estimates. 10 records from Saltern microbial community diversity. 186 records from Marine sediment Raw sequence reads. 5 records from Baikal Archaea Metagenome. 15 records from Bacterial diversity in snow from mid-latitude mountain areas: Alps, Eastern Anatolia, Karakoram and Himalaya.. 7 records from Sediment Microcosm Metagenome. 85 records from Bacterias y Arqueas de la transición Andino-Amazónica del departamento del Caquetá - Proyecto Colombia BIO. 284 records from Mariana and Kermadec Trench sediment 16S rRNA gene sequencing. 7 records from seawater metagenome Genome sequencing and assembly. 33 records from seawater bacterial community Raw sequence reads. 60 records from Methanogens and iron-reducing bacteria are major contributors to mercury methylation in boreal lake sediments. 70 records from PAH-contaminated sediment from the Lagos Lagoon, Nigeria. 280 records from ADDOMEx. 12 records from Eukaryote diversity assessment of sediments of the Western English Channel. 66 records from Mediterranean Contaminated Pelagic communities. 212 records from ADDOMEx Tier 3 Experiments: Mesocosm Si with Gulf of Mexico coastal waters. 11 records from Hypersaline sapropels Targeted loci environmental. 48 records from Enrichment of abundant sedimentary Bathyarchaeota demonstrating organoautotrophic metabolic capabilities. 224 records from MeHg Coal Ash. 443 records from Marine Sediment from the Berkeley Bay Targeted Locus (Loci). 109 records from Chandeleur Island 2016 Amplicon Study Raw sequence reads. 37 records from Marine bacterial, archaeal and eukaryotic diversity and community structure on the continental shelf of the Western Antarctic Peninsula. 42 records from marine Archaea metagenome. 457 records from Time course change of microbial community in tsunami sediment caused by the Great East Japan Earthquake. 38 records from Shotgun Metagenomic Sequencing of the Arctic Ocean during Winter-Spring Transition. 124 records from Pelagic Gulf of Mexico Targeted loci environmental. 6 records from The effect of salinity in prokaryotic communities in an estuary. 1 records from Socompa Lake Stromatolite Shotgun Metagenomic Sequencing. 1 records from sediment microorganisms nirK gene Raw sequence reads. 6 records from Metagenomic investigation of the coastal region of south Gujarat using soil sample - Nargol, Umargam and Dandi. 29 records from marine sample sequencing. 1 records from Assessing the microbial diversity in Cape Comorin ocean water. 103 records from 16S data describing Antarctic benthic sediment. 69 records from surface sediment Raw sequence reads. 2 records from rRNA, rDNA bacteria thaw ponds Targeted loci environmental. 61 records from Deep-sea post-eruption "snowblower" microbial blooms raw sequence reads. 1 records from Sediment saline lake Grevelingen (Netherlands) Raw sequence reads. 43 records from Surface sediment of Yellow Sea, Bohai Sea and north East China Sea Metagenome. 8 records from marine metagenome. 18 records from Response of soil bacteria to anthropogenic soil variables at large spatial scales. 5 records from ETNP Targeted Locus (Loci). 1 records from Red Sea sediment 2011 Targeted Locus (Loci). 50 records from Stratification of anaerobic methanotrophs in cold-seep sediments. 32 records from Blue Mountains Swamp Archaea. 46 records from Raw sequence reads. 625 records from estuary metagenome Raw sequence reads. 1 records from Dissolved compounds excreted by copepods reshape the diversity and the activity of marine bacterioplankton community. 150 records from Prokaryotic microbial communities structure in the headwater watchment of Dongjiang River in the south of China. 2 records from Marine metagenome ICM_AWP. 16 records from Eastern offshore environmental monitoring of Krishna Godavari Basin Bay of Bengal 2013-2016, Funded by: ONGC India. 116 records from 16S rDNA sequencing. 8 records from Global phylogeography survey of thermophilic spores in marine sediments.. 19 records from Prokaryotic community structure in the deep Southwest Indian Ocean with an emphasis on actinobacteria Targeted Locus (Loci). 45 records from Temporal dynamics of the particle-attached and free-living microbial communities from coastal seawater. 58 records from Microbial communities in marine surface water. 22 records from Marine sediment metagenome ICM_FIS. 10 records from Spatial Variation of Coastal Bacterioplankton Community along a Nitrogen and Phosphorus Co-pollution Gradient. 6 records from Coral metagenome ICM_CCB. 174 records from Sea spray aerosols at Three California Beaches. 92 records from Southern Ocean microorganisms Targeted Locus (Loci). 10 records from PCB-contaminated sediment Genome sequencing. 21 records from Southern Ocean. 7 records from Metabolically active microbial communities in marine sediment under high-CO2 and low-pH extremes. 1 records from Marine metagenome ICM_DOF. 17 records from 16S rRNA amplicon sequences of Baltic Sea bacterioplankton. 5 records from Tucurui_Metagenoma_MGRAST. 1 records from UK coast natural seawater Genome sequencing. 17 records from 16S rRNA genes Random survey. 161 records from Archaea 16S 01-13 Genome sequencing and assembly. 41 records from microbes in coastal sea. 121 records from Microbial biogeography of French caves. 116 records from Caspian Sea Sediment - 16S Survey Targeted Locus (Loci). 11 records from Benthic microbial communities in the sediments of the Southern Ocean. 4 records from Amplicon-Based Illumina Sequencing Reveals High Diversity of Phytoplankton in the Coastal Waters of Qinhuangdao. 586 records from Short-term interaction of pyrene and cadmium in prokaryotic community in coastal sediment microcosms. 2835 records from Nahant Collection. 8 records from Biogeography of subsurface prokaryotic communities along with sediment deposition of sediments. 14 records from aquatic bacterial metagenome Raw sequence reads. 178 records from Marine (Aarhus) and freshwater (Lake Constance) sediment Raw sequence reads. 3 records from rDNA amplicon sequencing of Western North Atlantic microbial community. 1 records from Study on bacterial diversity and functionality in the Adriatic Sea. 156 records from Variations in prokaryotic community assembly and predicted metabolic potential of surface sediments with geography in the coastal northern Zhejiang, East China Sea. 14 records from Structure and function of picoplankton and virus communities along zonal gradients in the South Pacific Ocean. 6 records from Pyrosequencing reveals highly diverse and species-specific microbial communities in sponges from the Red Sea. 3 records from Picocyanobacterial diversity in spring in the East China Sea and the East Sea (Targeted loci environmental). 26 records from marine sediment metagenome Targeted loci environmental. 10 records from Uncultured Microbial Consortia in Industrialized Sites on Egypt''s Red Sea Coast Targeted loci environmental. 15 records from Eastern Mediterranean Sea Lignin and Xylan enrichments. 9 records from Ice Wedge Polygon. 1 records from Nanticoke Harbour, ON, Canada (plankton SSU 454 sequencing). 55 records from Effects of Fecal Input, Environmental Conditions, and Environmental Sources on Enterococci Concentrations in an Estuarine Ecosystem. 422 records from uncultured prokaryote Targeted loci environmental. 5 records from Microbial Community Diversity Response to a Changing Arctic Ocean. 15 records from Deep mud-volcano biosphere in the Nankai accretionary wedge. 23 records from Antimony contaminated sediments Raw sequence reads. 44 records from Pelagic Microbiome: viruses to protists. 16S and 18S data from oceanic samples collected at the chlorophyll maximum.. 80 records from water Raw sequence reads. 5 records from A Method for Studying Protistan Diversity Using Massively Parallel Sequencing of V9 Hypervariable Regions of Small-Subunit Ribosomal RNA Genes. 21 records from ZRU sediment metagenome Metagenome. 40 records from estuary metagenome Raw sequence reads. 239 records from MiSeq 16S rRNA gene (prokaryotic 16S rRNA gene) sequences of 33 Mai Po sediments, including 18 samples from winter and 15 samples from summer. 12 records from Hydrothermal Deposit Targeted Locus (Loci). 26 records from Gulf of Mexico Alkane Reactors Metagenome. 1 records from There are 3 zooplankton samples from 3 different ponds, we collected sample and use the fresh samples to do DNA extraction directly, then mix them with adjustment guided by the number of species within each of them. At last, use Hiseq-2599 PE-150 to do NGS work. 3 records from Copepod induced bacterial community Raw sequence reads. 9 records from Sundarbans estuarine ecosystem Metagenome. 142 records from Microbial communities in the ocean Raw sequence reads. 386 records from Community structure of Archaea in the western North Pacific and the Arctic Ocean. 4 records from Characteristics of eukaryotic plankton community in the Coastal Waters of Rongcheng by Illumina sequencing. 32 records from marine sediment metagenome Targeted loci environmental. 46 records from Microbial diversity in benthic stream sediment. 4 records from Uncultered bacterium Targeted Locus (Loci). 13 records from KB34 Transcriptome or Gene expression. 228 records from DSMZ Prokarya Collection Catalogue. 65 records from marine metagenome Metagenome. 18 records from Simulated crude oil seepage Caspian Sea Raw sequence reads. 1761 records from Coral. 216 records from 16S rDNA amplicon of Bacteria and Archaea Metagenome. 3 records from Appliaction of metagenomic technique for isolation of microbes from mangroves for potential use in biofertilization and bioremediation. 103 records from Coastal seawater influenced by the municipal effluents Raw sequence reads. 6 records from Marine metagenome ICM_WBS. 4 records from Transplant and re-transplant microcosms of Baltic Proper and Bothnian Sea bacterioplankton Targeted Locus (Loci). 94 records from A long-standing complex tropical dipole shapes marine microbial biogeography. 35 records from Shotgun metagenomic analysis of Lake Paajarvi sediment microbes.. 29 records from Surface Diatom Sediments of Deep Freshwater Lake Baikal. 53 records from Archaea. 97 records from the under-explored coal gangue and the adjacent acid mine drainage creek soil Raw sequence reads. 759 records from marine sediment metagenome Metagenome. 153 records from Biological rejuvenation of iron oxides in bioturbated marine sediments. 268 records from Pond sediments Metagenome. 8 records from Ascidian and Seawater Metagenome. 2 records from Distributions and Abundances of Sublineages of the N2-Fixing Cyanobacterium Candidatus Atelocyanobacterium thalassa (UCYN-A) in the Noumea Lagoon. 96 records from Arctic Ocean. 3 records from Microbial communities in estuarine sediments. 62 records from Effects of different types of wastewater on microbial degradation of 2,2'',4,4''-tetrabromodiphenyl ether (BDE-47) in anaerobic sediment.. 1146 records from MICROBIS database. 7 records from Metagenome microbial communities of bottom sediments of the Kara Sea. 2 records from marine metagenome Targeted Locus (Loci). 48 records from bacterial community in the deep-sea surface sediments. 31 records from Green Edge microcosms Raw sequence reads. 13 records from Marine subseafloor sediment Targeted Locus (Loci). 28 records from Cascading influence of inorganic nitrogen sources on DOM production composition lability and microbial community structure in the open ocean. 22 records from Soil bacterial communities (Hainich National Park). 4 records from Soil microbial response to organic disturbances. 7 records from Deep Subsurface Basalts Targeted Locus (Loci). 46 records from Bacterial community of river sediment enriched with polycyclic aromatic hydrocarbons. 306 records from marine sediment metagenome Targeted loci environmental. 1 records from Enrichment of organohalide respiring bacteria. 37 records from Methane and dissolved organic carbon fueled microbial loop supports a tropical subterranean estuary ecosystem. 3 records from Zooplankton microbiome of the Amazon River Plume and western trophic North Atlantic. 137 records from Archaea microbial communities structure in the sediment and downarea soil of the Fengshuba Reservoir in the Guangdong Provinve, South China. 14546 records from Marine metagenomes Metagenome. 1 records from NEW-1. 17 records from Deep Sea Sponge and Seawater Targeted Locus (Loci). 4 records from Red Sea microbial plankton Raw sequence reads. 132 records from Diversity of archaeal and bacterial 16S rRNA gene in marine sediment in Aarhus Bay. 87 records from microbial community composition of marine water and sediment. 237 records from Development and validation of a multi-trophic metabarcoding biotic index for benthic organic enrichment biomonitoring using a salmon farm case-study.. 9 records from sediment metagenome Raw sequence reads. 34 records from Nitrate-storing microorganisms in sediments of the Bornholm Basin. 9 records from Marine sediment Raw sequence reads. 45 records from MiSeq 16S rRNA gene (Thaumarchaeota 16S rRNA gene) sequences of 12 SCS sediments. 104 records from 16S_Sediment_Bolinao. 19 records from Biological Resource Center, Department of Biotechnology, National Institute of Technology and Evaluation. 151 records from Diversity of SE Pacific benthic Bacteria and Archaea communities Targeted Locus (Loci). 1607 records from SCHEMA_Sediment. 14 records from Marine metagenome ICM_GPS. 1150 records from Sediment Metagenome Raw sequence reads. 87 records from Dark ocean microbial diversity. 39 records from Microbial community of Red Sea (16S amplicon) Targeted Locus (Loci). 188 records from Aarhus Bay Station M5 sediment metagenome sequencing. 1 records from freshwater sediment metagenome Metagenome. 43 records from Metagenomic investigation of six depths from the anchialine Bundera sinkhole. 1 records from Bacterial 16S rRNA and fungal ITS Metagenome. 18 records from Peruvian eddy shotgun metagenomes. 9 records from marine methane seep Targeted Locus (Loci). 7 records from Spatial and environmental variation in whole microbial communities in Fildes Bay, King George Island, Antarctica Raw sequence reads. Data from some individual datasets included in this download may be licensed under less restrictive terms. |
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