Network of microRNA-transcriptional factor-mRNA in cold response of turbot Scophthalmus maximus
The aim of this study is to understand fish cold-tolerant mechanism. We analyzed the transcriptional reactions to the cold condition in turbot Scophthalmus maximus by using RNA-seq and microRNA (miRNA)-seq. Meio-gynogenetic diploid turbots were treated at 0 degrees C to distinguish the cold-tolerant...
Published in: | Fish Physiology and Biochemistry |
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Language: | English |
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Online Access: | http://ir.qdio.ac.cn/handle/337002/161609 https://doi.org/10.1007/s10695-019-00611-y |
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ftchinacasciocas:oai:ir.qdio.ac.cn:337002/161609 2023-05-15T18:15:39+02:00 Network of microRNA-transcriptional factor-mRNA in cold response of turbot Scophthalmus maximus Nie, Miaomiao Tan, Xungang Lu, Yunliang Wu, Zhihao Li, Jun Xu, Dongdong Zhang, Peijun You, Feng 2019-04-01 http://ir.qdio.ac.cn/handle/337002/161609 https://doi.org/10.1007/s10695-019-00611-y 英语 eng SPRINGER FISH PHYSIOLOGY AND BIOCHEMISTRY http://ir.qdio.ac.cn/handle/337002/161609 doi:10.1007/s10695-019-00611-y Scophthalmus maximus Cold tolerance Transcription microRNA Transcription factor Biochemistry & Molecular Biology Fisheries Physiology FLOUNDER-PARALICHTHYS-OLIVACEUS OXIDATIVE STRESS GENE-REGULATION CELL CARCINOMA EXPRESSION ZEBRAFISH EVOLUTION TEMPERATURE TISSUES MIR-217 期刊论文 2019 ftchinacasciocas https://doi.org/10.1007/s10695-019-00611-y 2022-06-27T05:40:47Z The aim of this study is to understand fish cold-tolerant mechanism. We analyzed the transcriptional reactions to the cold condition in turbot Scophthalmus maximus by using RNA-seq and microRNA (miRNA)-seq. Meio-gynogenetic diploid turbots were treated at 0 degrees C to distinguish the cold-tolerant (CT) and cold-sensitive (CS) groups. The results showed that there were quite different responses at both mRNA and miRNA levels, with more up-regulated mRNAs (1069 vs. 194) and less down-regulated miRNAs (4 vs. 1) in CT versus CS relative to the control group. The network of miRNA-transcription factor-mRNA, regulating turbot different response to cold stress, was constructed, which involved in cell cycle, component of cell membrane, signal transduction, and circadian rhythm pathways. The above information demonstrates mechanisms by which cold tolerance is increased in fish. Report Scophthalmus maximus Turbot Institute of Oceanology, Chinese Academy of Sciences: IOCAS-IR Fish Physiology and Biochemistry 45 2 583 597 |
institution |
Open Polar |
collection |
Institute of Oceanology, Chinese Academy of Sciences: IOCAS-IR |
op_collection_id |
ftchinacasciocas |
language |
English |
topic |
Scophthalmus maximus Cold tolerance Transcription microRNA Transcription factor Biochemistry & Molecular Biology Fisheries Physiology FLOUNDER-PARALICHTHYS-OLIVACEUS OXIDATIVE STRESS GENE-REGULATION CELL CARCINOMA EXPRESSION ZEBRAFISH EVOLUTION TEMPERATURE TISSUES MIR-217 |
spellingShingle |
Scophthalmus maximus Cold tolerance Transcription microRNA Transcription factor Biochemistry & Molecular Biology Fisheries Physiology FLOUNDER-PARALICHTHYS-OLIVACEUS OXIDATIVE STRESS GENE-REGULATION CELL CARCINOMA EXPRESSION ZEBRAFISH EVOLUTION TEMPERATURE TISSUES MIR-217 Nie, Miaomiao Tan, Xungang Lu, Yunliang Wu, Zhihao Li, Jun Xu, Dongdong Zhang, Peijun You, Feng Network of microRNA-transcriptional factor-mRNA in cold response of turbot Scophthalmus maximus |
topic_facet |
Scophthalmus maximus Cold tolerance Transcription microRNA Transcription factor Biochemistry & Molecular Biology Fisheries Physiology FLOUNDER-PARALICHTHYS-OLIVACEUS OXIDATIVE STRESS GENE-REGULATION CELL CARCINOMA EXPRESSION ZEBRAFISH EVOLUTION TEMPERATURE TISSUES MIR-217 |
description |
The aim of this study is to understand fish cold-tolerant mechanism. We analyzed the transcriptional reactions to the cold condition in turbot Scophthalmus maximus by using RNA-seq and microRNA (miRNA)-seq. Meio-gynogenetic diploid turbots were treated at 0 degrees C to distinguish the cold-tolerant (CT) and cold-sensitive (CS) groups. The results showed that there were quite different responses at both mRNA and miRNA levels, with more up-regulated mRNAs (1069 vs. 194) and less down-regulated miRNAs (4 vs. 1) in CT versus CS relative to the control group. The network of miRNA-transcription factor-mRNA, regulating turbot different response to cold stress, was constructed, which involved in cell cycle, component of cell membrane, signal transduction, and circadian rhythm pathways. The above information demonstrates mechanisms by which cold tolerance is increased in fish. |
format |
Report |
author |
Nie, Miaomiao Tan, Xungang Lu, Yunliang Wu, Zhihao Li, Jun Xu, Dongdong Zhang, Peijun You, Feng |
author_facet |
Nie, Miaomiao Tan, Xungang Lu, Yunliang Wu, Zhihao Li, Jun Xu, Dongdong Zhang, Peijun You, Feng |
author_sort |
Nie, Miaomiao |
title |
Network of microRNA-transcriptional factor-mRNA in cold response of turbot Scophthalmus maximus |
title_short |
Network of microRNA-transcriptional factor-mRNA in cold response of turbot Scophthalmus maximus |
title_full |
Network of microRNA-transcriptional factor-mRNA in cold response of turbot Scophthalmus maximus |
title_fullStr |
Network of microRNA-transcriptional factor-mRNA in cold response of turbot Scophthalmus maximus |
title_full_unstemmed |
Network of microRNA-transcriptional factor-mRNA in cold response of turbot Scophthalmus maximus |
title_sort |
network of microrna-transcriptional factor-mrna in cold response of turbot scophthalmus maximus |
publisher |
SPRINGER |
publishDate |
2019 |
url |
http://ir.qdio.ac.cn/handle/337002/161609 https://doi.org/10.1007/s10695-019-00611-y |
genre |
Scophthalmus maximus Turbot |
genre_facet |
Scophthalmus maximus Turbot |
op_relation |
FISH PHYSIOLOGY AND BIOCHEMISTRY http://ir.qdio.ac.cn/handle/337002/161609 doi:10.1007/s10695-019-00611-y |
op_doi |
https://doi.org/10.1007/s10695-019-00611-y |
container_title |
Fish Physiology and Biochemistry |
container_volume |
45 |
container_issue |
2 |
container_start_page |
583 |
op_container_end_page |
597 |
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1766188821447180288 |