The complete genome of hydrocarbon-degrading Pseudoalteromonas sp NJ289 and its phylogenetic relationship

Genus Pseudoalteromonas belongs to Family Pseudoalteromonadaceae in Gammaproteobacteria. A cold-adapted gram-negative bacterium, hydrocarbon-degrading Pseudoalteromonas sp. NJ289, was isolated from sea-ice of the Antarctica region, and sequenced the whole genome through the next generation sequencin...

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Bibliographic Details
Published in:Acta Oceanologica Sinica
Main Authors: Liu Fangming, Wang Yibin, Qu Changfeng, Zheng Zhou, Miao Jinlai, Xu Hua, Xiao Tian
Format: Article in Journal/Newspaper
Language:English
Published: 2017
Subjects:
Pseudoalteromonas
Low Temperature
Environmental Adaptability
Sequencing
Phylogenetic Tree
Antarc*
Antarctica
Sea ice
Online Access:http://ir.qdio.ac.cn/handle/337002/136372
https://doi.org/10.1007/s13131-017-0979-1
Description
Summary:Genus Pseudoalteromonas belongs to Family Pseudoalteromonadaceae in Gammaproteobacteria. A cold-adapted gram-negative bacterium, hydrocarbon-degrading Pseudoalteromonas sp. NJ289, was isolated from sea-ice of the Antarctica region, and sequenced the whole genome through the next generation sequencing platform. The assembly yielded three contigs representing two chromosomes and one plasmid with the sizes of 3.2 Mb, 636 kb and 1.8 kb, respectively. The G+C contents of genome were 40.83% and included 3 589 ORFs. Functional annotation indicated some potential roles in enzymatic activity and environmental adaptability. This study may help for understanding the population diverse, evolutionary ecology and the microbial interaction.

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