Population genetic structure and identification of loci under selection in the invasive tunicate, Botryllus schlosseri, using newly developed EST-SSRs

Botryllus schlosseri, also known as golden star tunicate, is generally considered of European origin and has successfully invaded coastal waters of all continents except Antarctica. Owing to its significantly negative ecological impacts, it is crucial to understand its dispersal dynamics and mechani...

Full description

Bibliographic Details
Published in:Biochemical Systematics and Ecology
Main Authors: Lin, Yaping, Zhan, Aibin
Format: Report
Language:unknown
Published: 2016
Subjects:
Online Access:http://ir.rcees.ac.cn/handle/311016/36141
https://doi.org/10.1016/j.bse.2016.05.007
id ftchacadscircees:oai:ir.rcees.ac.cn:311016/36141
record_format openpolar
spelling ftchacadscircees:oai:ir.rcees.ac.cn:311016/36141 2023-05-15T13:39:48+02:00 Population genetic structure and identification of loci under selection in the invasive tunicate, Botryllus schlosseri, using newly developed EST-SSRs Lin, Yaping Zhan, Aibin 2016-06 http://ir.rcees.ac.cn/handle/311016/36141 https://doi.org/10.1016/j.bse.2016.05.007 unknown BIOCHEMICAL SYSTEMATICS AND ECOLOGY http://ir.rcees.ac.cn/handle/311016/36141 doi:10.1016/j.bse.2016.05.007 cn.org.cspace.api.content.CopyrightPolicy@737a1c Biological Invasion Botryllus Schlosseri Genetic Diversity Golden Star Tunicate Microsatellite Invasive Species Tunicate 期刊论文 2016 ftchacadscircees https://doi.org/10.1016/j.bse.2016.05.007 2020-12-22T10:23:43Z Botryllus schlosseri, also known as golden star tunicate, is generally considered of European origin and has successfully invaded coastal waters of all continents except Antarctica. Owing to its significantly negative ecological impacts, it is crucial to understand its dispersal dynamics and mechanisms of invasion success. Here, we identified 1020 microsatellite-containing sequences from 98,626 expressed sequence tags (ESTs), and developed and characterized 17 polymorphic microsatellites (i.e. EST-SSRs) based on populations both from native (French coast) and invasive ranges (Canadian coast). The number of alleles, observed heterozygosity, and expected heterozygosity ranged from 2 to 12, 0.200 to 0.783, and 0.523 to 0.888 for the French population, and from 2 to 10, 0 to 0.524 and 0.043 to 0.827 for the Canadian population, respectively. We found significant population genetic differentiation between the native and invasive populations (pairwise F-ST = 0.1712). Moreover, principal coordinates analysis and Bayesian clustering test suggest long-distance dispersal between distant populations. When all loci were subjected for selection analyses, two loci (BS3244 and BS5339) were under selection based on the LOSITAN test. The results obtained in this study can help understand how ecological and evolutionary processes shape population genetic structure, and further how these processes contribute to invasion success. (C) 2016 Elsevier Ltd. All rights reserved. Report Antarc* Antarctica Research Center for Eco-Environmental Sciences: RCEES OpenIR (Chinese Academy of Sciences) Biochemical Systematics and Ecology 66 331 336
institution Open Polar
collection Research Center for Eco-Environmental Sciences: RCEES OpenIR (Chinese Academy of Sciences)
op_collection_id ftchacadscircees
language unknown
topic Biological Invasion
Botryllus Schlosseri
Genetic Diversity
Golden Star Tunicate
Microsatellite
Invasive Species
Tunicate
spellingShingle Biological Invasion
Botryllus Schlosseri
Genetic Diversity
Golden Star Tunicate
Microsatellite
Invasive Species
Tunicate
Lin, Yaping
Zhan, Aibin
Population genetic structure and identification of loci under selection in the invasive tunicate, Botryllus schlosseri, using newly developed EST-SSRs
topic_facet Biological Invasion
Botryllus Schlosseri
Genetic Diversity
Golden Star Tunicate
Microsatellite
Invasive Species
Tunicate
description Botryllus schlosseri, also known as golden star tunicate, is generally considered of European origin and has successfully invaded coastal waters of all continents except Antarctica. Owing to its significantly negative ecological impacts, it is crucial to understand its dispersal dynamics and mechanisms of invasion success. Here, we identified 1020 microsatellite-containing sequences from 98,626 expressed sequence tags (ESTs), and developed and characterized 17 polymorphic microsatellites (i.e. EST-SSRs) based on populations both from native (French coast) and invasive ranges (Canadian coast). The number of alleles, observed heterozygosity, and expected heterozygosity ranged from 2 to 12, 0.200 to 0.783, and 0.523 to 0.888 for the French population, and from 2 to 10, 0 to 0.524 and 0.043 to 0.827 for the Canadian population, respectively. We found significant population genetic differentiation between the native and invasive populations (pairwise F-ST = 0.1712). Moreover, principal coordinates analysis and Bayesian clustering test suggest long-distance dispersal between distant populations. When all loci were subjected for selection analyses, two loci (BS3244 and BS5339) were under selection based on the LOSITAN test. The results obtained in this study can help understand how ecological and evolutionary processes shape population genetic structure, and further how these processes contribute to invasion success. (C) 2016 Elsevier Ltd. All rights reserved.
format Report
author Lin, Yaping
Zhan, Aibin
author_facet Lin, Yaping
Zhan, Aibin
author_sort Lin, Yaping
title Population genetic structure and identification of loci under selection in the invasive tunicate, Botryllus schlosseri, using newly developed EST-SSRs
title_short Population genetic structure and identification of loci under selection in the invasive tunicate, Botryllus schlosseri, using newly developed EST-SSRs
title_full Population genetic structure and identification of loci under selection in the invasive tunicate, Botryllus schlosseri, using newly developed EST-SSRs
title_fullStr Population genetic structure and identification of loci under selection in the invasive tunicate, Botryllus schlosseri, using newly developed EST-SSRs
title_full_unstemmed Population genetic structure and identification of loci under selection in the invasive tunicate, Botryllus schlosseri, using newly developed EST-SSRs
title_sort population genetic structure and identification of loci under selection in the invasive tunicate, botryllus schlosseri, using newly developed est-ssrs
publishDate 2016
url http://ir.rcees.ac.cn/handle/311016/36141
https://doi.org/10.1016/j.bse.2016.05.007
genre Antarc*
Antarctica
genre_facet Antarc*
Antarctica
op_relation BIOCHEMICAL SYSTEMATICS AND ECOLOGY
http://ir.rcees.ac.cn/handle/311016/36141
doi:10.1016/j.bse.2016.05.007
op_rights cn.org.cspace.api.content.CopyrightPolicy@737a1c
op_doi https://doi.org/10.1016/j.bse.2016.05.007
container_title Biochemical Systematics and Ecology
container_volume 66
container_start_page 331
op_container_end_page 336
_version_ 1766124940242714624