Bacterial community structure in the soft coral, Alcyonium antarcticum from Antarctica
Maintenance and Update Frequency: notPlanned Credit Webster, Nicole S, Dr (Principal Investigator) The structure and composition of microbial communities inhabiting the soft coral Alcyonium antarcticum were investigated across 3 differentially contaminated sites within McMurdo Sound, Antarctica - Mc...
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ftands:oai:ands.org.au::697348 2023-12-24T10:11:30+01:00 Bacterial community structure in the soft coral, Alcyonium antarcticum from Antarctica AIMS Data Centre (distributor) AIMS Data Centre (pointOfContact) Australian Institute of Marine Science (AIMS) (hasAssociationWith) Data Manager, AIMS Data Centre (hasAssociationWith) Data Manager, AIMS Data Centre (pointOfContact) Webster, Nicole S, Dr (hasPrincipalInvestigator) Spatial: westlimit=166.6732; southlimit=-77.863; eastlimit=166.6732; northlimit=-77.863 Spatial: westlimit=166.75; southlimit=-77.855; eastlimit=166.75; northlimit=-77.855 Spatial: westlimit=166.652; southlimit=-77.857; eastlimit=166.652; northlimit=-77.857 https://researchdata.edu.au/bacterial-community-structure-antarcticum-antarctica/697348 unknown Australian Ocean Data Network https://researchdata.edu.au/bacterial-community-structure-antarcticum-antarctica/697348 1fcd76a5-dc94-4197-bb87-6f5999167566 Australian Institute of Marine Science (AIMS) oceans dataset ftands 2023-11-27T23:28:12Z Maintenance and Update Frequency: notPlanned Credit Webster, Nicole S, Dr (Principal Investigator) The structure and composition of microbial communities inhabiting the soft coral Alcyonium antarcticum were investigated across 3 differentially contaminated sites within McMurdo Sound, Antarctica - McMurdo Station (MM), Scott Base (SB) and Cape Armitage (CA). \n \nSamples from all sites were subjected to culture-based analysis, denaturing gradient gel electrophoresis (DGGE), 16S rRNA gene clone-library analysis, and (FISH). \n \nPhylogenetic groups included Gamma-, Alpha- and Beta- proteobacteria; Bacteroidetes; Firmicutes; Actinomycetales; Planctomycetes; and Chlorobi and bacteria from the functional group of sulfate-reducing bacteria.\n To investigate the structure and composition of microbial communities inhabiting the soft coral Alcyonium antarcticum. \n \nTo examine any variation within and between Alcyonium antarcticum bacterial communities from 3 differentially contaminated sites within McMurdo Sound, Antarctica .\n This was the first investigation of microbial communities associated with Antarctic soft corals. \n \nAccession numbers assigned to sequencing products: Culture1-Culture10 (DG312224, DG312225, DG312226, DG312227, DG312228, DG312229, DG312230, DG312231, DG312232, DG312233); OTU1-OTU15 (DG312234, DG312235, DG312236, DG312237, DG312238, DG312239, DG312240, DG312241, DG312242, DG312243, DG312244, DG312245, DG312246, DG312247, DG312248); DGGE Band1-Band11, (DG312249, DG312250, DG312251, DG312252, DG312253, DG312254, DG312255, DG312256, DG312257, DG312258) and Band14-Band16 (DG312259, DG312260, DG312261).\n Dataset Antarc* Antarctic Antarctica McMurdo Sound Research Data Australia (Australian National Data Service - ANDS) Antarctic McMurdo Sound McMurdo Station ENVELOPE(166.667,166.667,-77.850,-77.850) Scott Base ENVELOPE(166.766,166.766,-77.849,-77.849) Armitage ENVELOPE(166.667,166.667,-77.850,-77.850) Cape Armitage ENVELOPE(163.250,163.250,-78.150,-78.150) |
institution |
Open Polar |
collection |
Research Data Australia (Australian National Data Service - ANDS) |
op_collection_id |
ftands |
language |
unknown |
topic |
oceans |
spellingShingle |
oceans Bacterial community structure in the soft coral, Alcyonium antarcticum from Antarctica |
topic_facet |
oceans |
description |
Maintenance and Update Frequency: notPlanned Credit Webster, Nicole S, Dr (Principal Investigator) The structure and composition of microbial communities inhabiting the soft coral Alcyonium antarcticum were investigated across 3 differentially contaminated sites within McMurdo Sound, Antarctica - McMurdo Station (MM), Scott Base (SB) and Cape Armitage (CA). \n \nSamples from all sites were subjected to culture-based analysis, denaturing gradient gel electrophoresis (DGGE), 16S rRNA gene clone-library analysis, and (FISH). \n \nPhylogenetic groups included Gamma-, Alpha- and Beta- proteobacteria; Bacteroidetes; Firmicutes; Actinomycetales; Planctomycetes; and Chlorobi and bacteria from the functional group of sulfate-reducing bacteria.\n To investigate the structure and composition of microbial communities inhabiting the soft coral Alcyonium antarcticum. \n \nTo examine any variation within and between Alcyonium antarcticum bacterial communities from 3 differentially contaminated sites within McMurdo Sound, Antarctica .\n This was the first investigation of microbial communities associated with Antarctic soft corals. \n \nAccession numbers assigned to sequencing products: Culture1-Culture10 (DG312224, DG312225, DG312226, DG312227, DG312228, DG312229, DG312230, DG312231, DG312232, DG312233); OTU1-OTU15 (DG312234, DG312235, DG312236, DG312237, DG312238, DG312239, DG312240, DG312241, DG312242, DG312243, DG312244, DG312245, DG312246, DG312247, DG312248); DGGE Band1-Band11, (DG312249, DG312250, DG312251, DG312252, DG312253, DG312254, DG312255, DG312256, DG312257, DG312258) and Band14-Band16 (DG312259, DG312260, DG312261).\n |
author2 |
AIMS Data Centre (distributor) AIMS Data Centre (pointOfContact) Australian Institute of Marine Science (AIMS) (hasAssociationWith) Data Manager, AIMS Data Centre (hasAssociationWith) Data Manager, AIMS Data Centre (pointOfContact) Webster, Nicole S, Dr (hasPrincipalInvestigator) |
format |
Dataset |
title |
Bacterial community structure in the soft coral, Alcyonium antarcticum from Antarctica |
title_short |
Bacterial community structure in the soft coral, Alcyonium antarcticum from Antarctica |
title_full |
Bacterial community structure in the soft coral, Alcyonium antarcticum from Antarctica |
title_fullStr |
Bacterial community structure in the soft coral, Alcyonium antarcticum from Antarctica |
title_full_unstemmed |
Bacterial community structure in the soft coral, Alcyonium antarcticum from Antarctica |
title_sort |
bacterial community structure in the soft coral, alcyonium antarcticum from antarctica |
publisher |
Australian Ocean Data Network |
url |
https://researchdata.edu.au/bacterial-community-structure-antarcticum-antarctica/697348 |
op_coverage |
Spatial: westlimit=166.6732; southlimit=-77.863; eastlimit=166.6732; northlimit=-77.863 Spatial: westlimit=166.75; southlimit=-77.855; eastlimit=166.75; northlimit=-77.855 Spatial: westlimit=166.652; southlimit=-77.857; eastlimit=166.652; northlimit=-77.857 |
long_lat |
ENVELOPE(166.667,166.667,-77.850,-77.850) ENVELOPE(166.766,166.766,-77.849,-77.849) ENVELOPE(166.667,166.667,-77.850,-77.850) ENVELOPE(163.250,163.250,-78.150,-78.150) |
geographic |
Antarctic McMurdo Sound McMurdo Station Scott Base Armitage Cape Armitage |
geographic_facet |
Antarctic McMurdo Sound McMurdo Station Scott Base Armitage Cape Armitage |
genre |
Antarc* Antarctic Antarctica McMurdo Sound |
genre_facet |
Antarc* Antarctic Antarctica McMurdo Sound |
op_source |
Australian Institute of Marine Science (AIMS) |
op_relation |
https://researchdata.edu.au/bacterial-community-structure-antarcticum-antarctica/697348 1fcd76a5-dc94-4197-bb87-6f5999167566 |
_version_ |
1786166081952415744 |