Raw sequencing data of a Euphausiid-specific metabarcoding marker to detect krill species of the Southern Ocean in environmental DNA samples
Progress Code: completed Purpose To detect krill species in the Southern Ocean from environmental DNA samples. This data set contains the raw sequencing data generated with a Euphausiid specific metabarcoding marker (Euph_F: GTGACGATAAGACCCTATA; Crust16S_R(short): ATTACGCTGTTATCCCTAAAG, amplicon siz...
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ftands:oai:ands.org.au::2823240 2024-09-15T17:46:43+00:00 Raw sequencing data of a Euphausiid-specific metabarcoding marker to detect krill species of the Southern Ocean in environmental DNA samples AADC (owner) AADC, DATA OFFICER (distributor) AADC, DATA OFFICER (custodian) AU/AADC > Australian Antarctic Data Centre, Australia (hasAssociationWith) Australian Antarctic Data Centre (publisher) Australian Antarctic Division (sponsor) DEAGLE, BRUCE (hasPrincipalInvestigator) KING, ROB (hasPrincipalInvestigator) MACDONALD, ANNA (hasPrincipalInvestigator) NESTER, GEORGIA (hasPrincipalInvestigator) POLANOWSKI, ANDREA (hasPrincipalInvestigator) RAYMOND, BEN (collaborator) RAYMOND, BEN (hasPrincipalInvestigator) SUTER, LEONIE (collaborator) SUTER, LEONIE (hasPrincipalInvestigator) SUTER, LEONIE (author) WOTHERSPOON, SIMON (collaborator) WOTHERSPOON, SIMON (hasPrincipalInvestigator) Spatial: westlimit=77.2145; southlimit=-68.0036; eastlimit=147.4927; northlimit=-43.2379 Temporal: From 2019-11-16 to 2019-11-26 https://researchdata.edu.au/raw-sequencing-euphausiid-dna-samples/2823240 unknown Australian Ocean Data Network https://researchdata.edu.au/raw-sequencing-euphausiid-dna-samples/2823240 AAS_4556_V1_2019_Euphausiid_raw_sequencing_data AU/AADC > Australian Antarctic Data Centre, Australia biota oceans EARTH SCIENCE > BIOLOGICAL CLASSIFICATION > ANIMALS/INVERTEBRATES > ARTHROPODS > CRUSTACEANS > EUPHAUSIIDS (KRILL) METABARCODING ILLUMINA MISEQ ADS > Automated DNA Sequencer LABORATORY > LABORATORY AMD/AU AMD CEOS OCEAN > SOUTHERN OCEAN GEOGRAPHIC REGION > POLAR CONTINENT > ANTARCTICA > DAVIS STATION AUSTRALIA/NEW ZEALAND > AUSTRALIA > AUSTRALIA dataset ftands 2024-08-06T01:58:58Z Progress Code: completed Purpose To detect krill species in the Southern Ocean from environmental DNA samples. This data set contains the raw sequencing data generated with a Euphausiid specific metabarcoding marker (Euph_F: GTGACGATAAGACCCTATA; Crust16S_R(short): ATTACGCTGTTATCCCTAAAG, amplicon size ~209 bp including primers). Samples were collected in 2019 on a resupply voyage between Davis station (Antarctica) and Hobart (Tasmania). Further information on the samples, the data and the species detected can be found in the associated publication (Suter et al. (2023) Environmental DNA of Antarctic krill (Euphausia superba): measuring DNA fragmentation adds a temporal aspect to quantitative surveys. Environmental DNA). Dataset Antarc* Antarctic Antarctic Krill Antarctica Euphausia superba Southern Ocean Research Data Australia (Australian National Data Service - ANDS) |
institution |
Open Polar |
collection |
Research Data Australia (Australian National Data Service - ANDS) |
op_collection_id |
ftands |
language |
unknown |
topic |
biota oceans EARTH SCIENCE > BIOLOGICAL CLASSIFICATION > ANIMALS/INVERTEBRATES > ARTHROPODS > CRUSTACEANS > EUPHAUSIIDS (KRILL) METABARCODING ILLUMINA MISEQ ADS > Automated DNA Sequencer LABORATORY > LABORATORY AMD/AU AMD CEOS OCEAN > SOUTHERN OCEAN GEOGRAPHIC REGION > POLAR CONTINENT > ANTARCTICA > DAVIS STATION AUSTRALIA/NEW ZEALAND > AUSTRALIA > AUSTRALIA |
spellingShingle |
biota oceans EARTH SCIENCE > BIOLOGICAL CLASSIFICATION > ANIMALS/INVERTEBRATES > ARTHROPODS > CRUSTACEANS > EUPHAUSIIDS (KRILL) METABARCODING ILLUMINA MISEQ ADS > Automated DNA Sequencer LABORATORY > LABORATORY AMD/AU AMD CEOS OCEAN > SOUTHERN OCEAN GEOGRAPHIC REGION > POLAR CONTINENT > ANTARCTICA > DAVIS STATION AUSTRALIA/NEW ZEALAND > AUSTRALIA > AUSTRALIA Raw sequencing data of a Euphausiid-specific metabarcoding marker to detect krill species of the Southern Ocean in environmental DNA samples |
topic_facet |
biota oceans EARTH SCIENCE > BIOLOGICAL CLASSIFICATION > ANIMALS/INVERTEBRATES > ARTHROPODS > CRUSTACEANS > EUPHAUSIIDS (KRILL) METABARCODING ILLUMINA MISEQ ADS > Automated DNA Sequencer LABORATORY > LABORATORY AMD/AU AMD CEOS OCEAN > SOUTHERN OCEAN GEOGRAPHIC REGION > POLAR CONTINENT > ANTARCTICA > DAVIS STATION AUSTRALIA/NEW ZEALAND > AUSTRALIA > AUSTRALIA |
description |
Progress Code: completed Purpose To detect krill species in the Southern Ocean from environmental DNA samples. This data set contains the raw sequencing data generated with a Euphausiid specific metabarcoding marker (Euph_F: GTGACGATAAGACCCTATA; Crust16S_R(short): ATTACGCTGTTATCCCTAAAG, amplicon size ~209 bp including primers). Samples were collected in 2019 on a resupply voyage between Davis station (Antarctica) and Hobart (Tasmania). Further information on the samples, the data and the species detected can be found in the associated publication (Suter et al. (2023) Environmental DNA of Antarctic krill (Euphausia superba): measuring DNA fragmentation adds a temporal aspect to quantitative surveys. Environmental DNA). |
author2 |
AADC (owner) AADC, DATA OFFICER (distributor) AADC, DATA OFFICER (custodian) AU/AADC > Australian Antarctic Data Centre, Australia (hasAssociationWith) Australian Antarctic Data Centre (publisher) Australian Antarctic Division (sponsor) DEAGLE, BRUCE (hasPrincipalInvestigator) KING, ROB (hasPrincipalInvestigator) MACDONALD, ANNA (hasPrincipalInvestigator) NESTER, GEORGIA (hasPrincipalInvestigator) POLANOWSKI, ANDREA (hasPrincipalInvestigator) RAYMOND, BEN (collaborator) RAYMOND, BEN (hasPrincipalInvestigator) SUTER, LEONIE (collaborator) SUTER, LEONIE (hasPrincipalInvestigator) SUTER, LEONIE (author) WOTHERSPOON, SIMON (collaborator) WOTHERSPOON, SIMON (hasPrincipalInvestigator) |
format |
Dataset |
title |
Raw sequencing data of a Euphausiid-specific metabarcoding marker to detect krill species of the Southern Ocean in environmental DNA samples |
title_short |
Raw sequencing data of a Euphausiid-specific metabarcoding marker to detect krill species of the Southern Ocean in environmental DNA samples |
title_full |
Raw sequencing data of a Euphausiid-specific metabarcoding marker to detect krill species of the Southern Ocean in environmental DNA samples |
title_fullStr |
Raw sequencing data of a Euphausiid-specific metabarcoding marker to detect krill species of the Southern Ocean in environmental DNA samples |
title_full_unstemmed |
Raw sequencing data of a Euphausiid-specific metabarcoding marker to detect krill species of the Southern Ocean in environmental DNA samples |
title_sort |
raw sequencing data of a euphausiid-specific metabarcoding marker to detect krill species of the southern ocean in environmental dna samples |
publisher |
Australian Ocean Data Network |
url |
https://researchdata.edu.au/raw-sequencing-euphausiid-dna-samples/2823240 |
op_coverage |
Spatial: westlimit=77.2145; southlimit=-68.0036; eastlimit=147.4927; northlimit=-43.2379 Temporal: From 2019-11-16 to 2019-11-26 |
genre |
Antarc* Antarctic Antarctic Krill Antarctica Euphausia superba Southern Ocean |
genre_facet |
Antarc* Antarctic Antarctic Krill Antarctica Euphausia superba Southern Ocean |
op_source |
AU/AADC > Australian Antarctic Data Centre, Australia |
op_relation |
https://researchdata.edu.au/raw-sequencing-euphausiid-dna-samples/2823240 AAS_4556_V1_2019_Euphausiid_raw_sequencing_data |
_version_ |
1810495061151973376 |