V4 2018 eDNA, genetic CPR and large-volume eDNA raw sequencing data

In this data set we examined whether eDNA samples can detect similar numbers of species and community compositions as genetic continuous plankton recorder (CPR) samples. On the V4 voyage 2018 from Hobart to Macquarie island, small and large volume eDNA samples as well as genetic CPR samples were col...

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Bibliographic Details
Format: Dataset
Language:unknown
Published: Australian Ocean Data Network
Subjects:
biota
oceans
MARINE ENVIRONMENT MONITORING
EARTH SCIENCE
PLANKTON
BIOSPHERE
AQUATIC ECOSYSTEMS
ENVIRONMENTAL DNA
METABARCODING
BIOMONITORING
CPR &gt
Continuous Plankton Recorder
ADS &gt
Automated DNA Sequencer
R/V AA &gt
R/V Aurora Australis
LABORATORY
ACE/CRC
AMD
AMD/AU
CEOS
GEOGRAPHIC REGION &gt
POLAR
OCEAN &gt
SOUTHERN OCEAN
Southern Ocean
aurora australis
Macquarie Island
Online Access:https://researchdata.ands.org.au/v4-2018-edna-raw-sequencing/1447073
https://data.aad.gov.au/metadata/records/AAS_4556_V4_eDNA_data
https://data.aad.gov.au/eds/5074/download
https://secure3.aad.gov.au/proms/public/projects/report_project_public.cfm?project_no=AAS_4556
https://data.aad.gov.au/aadc/metadata/citation.cfm?entry_id=AAS_4556_V4_eDNA_data
Description
Summary:In this data set we examined whether eDNA samples can detect similar numbers of species and community compositions as genetic continuous plankton recorder (CPR) samples. On the V4 voyage 2018 from Hobart to Macquarie island, small and large volume eDNA samples as well as genetic CPR samples were collected. All samples were sequenced with a metazoan specific cytochrome c oxidase I marker (folder "2018_08_28 eDNA V4 COI" contains all genetic CPR and small volume eDNA samples, folder "2019_05_08_eDNA_V4_CBR_Repeats_COI" contains some repeated small volume eDNA samples and all large volume eDNA samples (also called CBR samples)). Additionally, all eDNA samples were sequenced using an 18S rRNA marker (folder "2018_09_19 eDNA V4 18s Ramaciotti") to assess overall biodiversity. Each folder contains the raw sequencing data (fastq format) as well as data indexes and readme files. Please contact us if you are planning on using this data (leonie.suter@aad.gov.au). More information about these datasets are contained in the readme files in the dataset.

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