Automated facial recognition for wildlife that lack unique markings: A deep learning approach for brown bears

• Published in: Ecology and Evolution
• Main Authors: Clapham, Melanie, Miller, Ed, Nguyen, Mary, Darimont, Chris T.
• Other Authors: Natural Sciences and Engineering Research Council of Canada
• Format: Article in Journal/Newspaper
• Language: English
• Published: Wiley 2020
• Subjects: British Columbia; Canada; Ursus arctos; Alaska
• Online Access: http://dx.doi.org/10.1002/ece3.6840; https://onlinelibrary.wiley.com/doi/pdf/10.1002/ece3.6840; https://onlinelibrary.wiley.com/doi/full-xml/10.1002/ece3.6840

Abstract Emerging technologies support a new era of applied wildlife research, generating data on scales from individuals to populations. Computer vision methods can process large datasets generated through image‐based techniques by automating the detection and identification of species and individuals. With the exception of primates, however, there are no objective visual methods of individual identification for species that lack unique and consistent body markings. We apply deep learning approaches of facial recognition using object detection, landmark detection, a similarity comparison network, and an support vector machine‐based classifier to identify individuals in a representative species, the brown bear Ursus arctos . Our open‐source application, BearID , detects a bear’s face in an image, rotates and extracts the face, creates an “embedding” for the face, and uses the embedding to classify the individual. We trained and tested the application using labeled images of 132 known individuals collected from British Columbia, Canada, and Alaska, USA. Based on 4,674 images, with an 80/20% split for training and testing, respectively, we achieved a facial detection (ability to find a face) average precision of 0.98 and an individual classification (ability to identify the individual) accuracy of 83.9%. BearID and its annotated source code provide a replicable methodology for applying deep learning methods of facial recognition applicable to many other species that lack distinguishing markings. Further analyses of performance should focus on the influence of certain parameters on recognition accuracy, such as age and body size. Combining BearID with camera trapping could facilitate fine‐scale behavioral research such as individual spatiotemporal activity patterns, and a cost‐effective method of population monitoring through mark–recapture studies, with implications for species and landscape conservation and management. Applications to practical conservation include identifying problem individuals in ...