Validating biochemical features at the genome level in the Antarctic bacterium Hymenobacter sp. strain UV11

• Published in: FEMS Microbiology Letters
• Main Authors: Marizcurrena, Juan José, Herrera, Lorena M, Costábile, Alicia, Morales, Danilo, Villadóniga, Carolina, Eizmendi, Agustina, Davyt, Danilo, Castro-Sowinski, Susana
• Other Authors: Agencia Nacional de Investigación e Innovación
• Format: Article in Journal/Newspaper
• Language: English
• Published: Oxford University Press (OUP) 2019
• Subjects: Antarctic; The Antarctic; Antarc*
• Online Access: http://dx.doi.org/10.1093/femsle/fnz177; http://academic.oup.com/femsle/advance-article-pdf/doi/10.1093/femsle/fnz177/29114649/fnz177.pdf; https://academic.oup.com/femsle/article-pdf/366/14/fnz177/42773137/fnz177.pdf

ABSTRACT We present experimental data that complement and validate some biochemical features at the genome level in the UVC-resistant Antarctic bacterium Hymenobacter sp. UV11 strain. The genome was sequenced, assembled and annotated. It has 6 096 246 bp, a GC content of 60.6% and 5155 predicted genes. The secretome analysis, by combining in silico predictions with shotgun proteomics data, showed that UV11 strain produces extracellular proteases and carbohydrases with potential biotechnological uses. We observed the formation of outer membrane vesicles, mesosomes and carbon-storage compounds by using transmission electron microscopy. The in silico analysis of the genome revealed the presence of genes involved in the metabolism of glycogen-like molecules and starch. By HPLC–UV–Vis analysis and 1H-NMR spectra, we verified that strain UV11 produces xanthophyll-like carotenoids such as 2′-hydroxyflexixanthin, and the in silico analysis showed that this bacterium has genes involved in the biosynthesis of cathaxanthin, zeaxanthin and astaxanthin. We also found genes involved in the repair of UV-damaged DNA such as a photolyase, the nucleotide excision repair system and the production of ATP-dependent proteases that are important cellular components involved in the endurance to physiological stresses. This information will help us to better understand the ecological role played by Hymenobacter strains in the extreme Antarctic environment.