Search Results

Machine Learning Models and Pathway Genome Data Base for Trypanosoma cruzi Drug Discovery.

by Sean Ekins, Jair Lage de Siqueira-Neto, Laura-Isobel McCall, Malabika Sarker, Maneesh Yadav, Elizabeth L Ponder, E Adam Kallel, Danielle Kellar, Steven Chen, Michelle Arkin, Barry A Bunin, James H McKerrow, Carolyn Talcott
Published in PLOS Neglected Tropical Diseases (2015)

Helminth genomics: The implications for human health.

by Paul J Brindley, Makedonka Mitreva, Elodie Ghedin, Sara Lustigman
Published in PLoS Neglected Tropical Diseases (2009)

Whole Genome Amplification and Reduced-Representation Genome Sequencing of Schistosoma japonicum Miracidia.

by Jonathan A Shortt, Daren C Card, Drew R Schield, Yang Liu, Bo Zhong, Todd A Castoe, Elizabeth J Carlton, David D Pollock
Published in PLOS Neglected Tropical Diseases (2017)

The mitochondrial genome of Toxocara canis.

by Aaron R Jex, Andrea Waeschenbach, D Timothy J Littlewood, Min Hu, Robin B Gasser
Published in PLoS Neglected Tropical Diseases (2008)

Optimization of parasite DNA enrichment approaches to generate whole genome sequencing data for Plasmodium falciparum from low parasitaemia samples

by Zalak Shah, Matthew Adams, Kara A. Moser, Biraj Shrestha, Emily M. Stucke, Miriam K. Laufer, David Serre, Joana C. Silva, Shannon Takala-Harrison
Published in Malaria Journal (2020)

Surveillance of emerging SARS-CoV-2 variants by nanopore technology-based genome sequencing

by J I Abeynayake, G P Chathuranga, MA Y Fernando, M K Sahoo
Published in Asian Pacific Journal of Tropical Medicine (2023)

Using deep learning to identify recent positive selection in malaria parasite sequence data

by Wouter Deelder, Ernest Diez Benavente, Jody Phelan, Emilia Manko, Susana Campino, Luigi Palla, Taane G. Clark
Published in Malaria Journal (2021)

The genomes of the yaws bacterium, Treponema pallidum subsp. pertenue, of nonhuman primate and human origin are not genomically distinct.

by Klára Janečková, Christian Roos, Pavla Fedrová, Nikola Tom, Darina Čejková, Simone Lueert, Julius D Keyyu, Idrissa S Chuma, Sascha Knauf, David Šmajs
Published in PLOS Neglected Tropical Diseases (2023)

New assembly, reannotation and analysis of the Entamoeba histolytica genome reveal new genomic features and protein content information.

by Hernan A Lorenzi, Daniela Puiu, Jason R Miller, Lauren M Brinkac, Paolo Amedeo, Neil Hall, Elisabet V Caler
Published in PLoS Neglected Tropical Diseases (2010)

TriTrypDB: An integrated functional genomics resource for kinetoplastida.

by Achchuthan Shanmugasundram, David Starns, Ulrike Böhme, Beatrice Amos, Paul A Wilkinson, Omar S Harb, Susanne Warrenfeltz, Jessica C Kissinger, Mary Ann McDowell, David S Roos, Kathryn Crouch, Andrew R Jones
Published in PLOS Neglected Tropical Diseases (2023)

The genome of Mycobacterium africanum West African 2 reveals a lineage-specific locus and genome erosion common to the M. tuberculosis complex.

by Stephen D Bentley, Iñaki Comas, Josephine M Bryant, Danielle Walker, Noel H Smith, Simon R Harris, Scott Thurston, Sebastien Gagneux, Jonathan Wood, Martin Antonio, Michael A Quail, Florian Gehre, Richard A Adegbola, Julian Parkhill, Bouke C de Jong
Published in PLoS Neglected Tropical Diseases (2012)

Revisiting the taxonomy and evolution of pathogenicity of the genus Leptospira through the prism of genomics.

by Antony T Vincent, Olivier Schiettekatte, Cyrille Goarant, Vasantha Kumari Neela, Eve Bernet, Roman Thibeaux, Nabilah Ismail, Mohd Khairul Nizam Mohd Khalid, Fairuz Amran, Toshiyuki Masuzawa, Ryo Nakao, Anissa Amara Korba, Pascale Bourhy, Frederic J Veyrier, Mathieu Picardeau
Published in PLOS Neglected Tropical Diseases (2019)

Discovery of genomic intervals that underlie nematode responses to benzimidazoles.

by Mostafa Zamanian, Daniel E Cook, Stefan Zdraljevic, Shannon C Brady, Daehan Lee, Junho Lee, Erik C Andersen
Published in PLOS Neglected Tropical Diseases (2018)

A genomic snapshot of Salmonella enterica serovar Typhi in Colombia.

by Paula Diaz Guevara, Mailis Maes, Duy Pham Thanh, Carolina Duarte, Edna Catering Rodriguez, Lucy Angeline Montaño, Thanh Ho Ngoc Dan, To Nguyen Thi Nguyen, Megan E Carey, Josefina Campos, Isabel Chinen, Enrique Perez, Stephen Baker
Published in PLOS Neglected Tropical Diseases (2021)

Genome-wide association testing in malaria studies in the presence of overdominance

by Morine Akoth, John Odhiambo, Bernard Omolo
Published in Malaria Journal (2023)

Mycobacterium leprae genomes from naturally infected nonhuman primates.

by Tanvi P Honap, Luz-Andrea Pfister, Genevieve Housman, Sarah Mills, Ross P Tarara, Koichi Suzuki, Frank P Cuozzo, Michelle L Sauther, Michael S Rosenberg, Anne C Stone
Published in PLOS Neglected Tropical Diseases (2018)

Genomic and epidemiological characteristics of SARS-CoV-2 in Africa.

by Jones Lamptey, Favour Oluwapelumi Oyelami, Michael Owusu, Bernard Nkrumah, Paul Oluwagbenga Idowu, Enoch Appiah Adu-Gyamfi, Armin Czika, Philip El-Duah, Richmond Yeboah, Augustina Sylverken, Oluwatayo Israel Olasunkanmi, Ellis Owusu-Dabo, Christian Drosten, Yaw Adu-Sarkodie
Published in PLOS Neglected Tropical Diseases (2021)

Genomic, epidemiological and digital surveillance of Chikungunya virus in the Brazilian Amazon.

by Felipe Gomes Naveca, Ingra Claro, Marta Giovanetti, Jaqueline Goes de Jesus, Joilson Xavier, Felipe Campos de Melo Iani, Valdinete Alves do Nascimento, Victor Costa de Souza, Paola Paz Silveira, José Lourenço, Mauricio Santillana, Moritz U G Kraemer, Josh Quick, Sarah C Hill, Julien Thézé, Rodrigo Dias de Oliveira Carvalho, Vasco Azevedo, Flavia Cristina da Silva Salles, Márcio Roberto Teixeira Nunes, Poliana da Silva Lemos, Darlan da Silva Candido, Glauco de Carvalho Pereira, Marluce Aparecida Assunção Oliveira, Cátia Alexandra Ribeiro Meneses, Rodrigo Melo Maito, Claudeth Rocha Santa Brígida Cunha, Daniela Palha de Sousa Campos, Marcia da Costa Castilho, Thalita Caroline da Silva Siqueira, Tiza Matos Terra, Carlos F Campelo de Albuquerque, Laura Nogueira da Cruz, André Luis de Abreu, Divino Valerio Martins, Daniele Silva de Moraes Vanlume Simoes, Renato Santana de Aguiar, Sérgio Luiz Bessa Luz, Nicholas Loman, Oliver G Pybus, Ester C Sabino, Osnei Okumoto, Luiz Carlos Junior Alcantara, Nuno Rodrigues Faria
Published in PLOS Neglected Tropical Diseases (2019)

Comparative and functional genomics of the protozoan parasite Babesia divergens highlighting the invasion and egress processes.

by Luis Miguel González, Karel Estrada, Ricardo Grande, Verónica Jiménez-Jacinto, Leticia Vega-Alvarado, Elena Sevilla, Jorge de la Barrera, Isabel Cuesta, Ángel Zaballos, José Manuel Bautista, Cheryl A Lobo, Alejandro Sánchez-Flores, Estrella Montero
Published in PLOS Neglected Tropical Diseases (2019)

Genome-Wide Prediction of Vaccine Candidates for Leishmania major: An Integrated Approach

by Satarudra Prakash Singh, Kriti Roopendra, Bhartendu Nath Mishra
Published in Journal of Tropical Medicine (2015)