Search Results

Whole genome sequences of three Treponema pallidum ssp. pertenue strains: yaws and syphilis treponemes differ in less than 0.2% of the genome sequence.

by Darina Cejková, Marie Zobaníková, Lei Chen, Petra Pospíšilová, Michal Strouhal, Xiang Qin, Lenka Mikalová, Steven J Norris, Donna M Muzny, Richard A Gibbs, Lucinda L Fulton, Erica Sodergren, George M Weinstock, David Smajs
Published in PLoS Neglected Tropical Diseases (2012)

Monkeypox virus genome sequence from an imported human case in Colombia

by Katherine Laiton-Donato, Diego A. Álvarez-Díaz, Carlos Franco-Muñoz, Héctor A. Ruiz-Moreno, Paola Rojas-Estévez, Andrés Prada, Alicia Rosales, Martha Lucía Ospina, Marcela Mercado-Reyes
Published in Biomédica (2022)

Whole-genome sequencing and phylogenetic analysis of rabies viruses from Jordan.

by Laith N Al-Eitan, Guanghui Wu, Megan Golding, Yue Tang, Hooman Goharriz, Denise A Marston, Anthony R Fooks, Lorraine M McElhinney
Published in PLOS Neglected Tropical Diseases (2021)

High infectivity and unique genomic sequence characteristics of Cryptosporidium parvum in China.

by Ruilian Jia, Wanyi Huang, Ni Huang, Zhengjie Yu, Na Li, Lihua Xiao, Yaoyu Feng, Yaqiong Guo
Published in PLOS Neglected Tropical Diseases (2022)

Complete genome sequences of two strains of Treponema pallidum subsp. pertenue from Ghana, Africa...

by Michal Strouhal, Lenka Mikalová, Pavla Havlíčková, Paolo Tenti, Darina Čejková, Ivan Rychlík, Sylvia Bruisten, David Šmajs
Published in PLOS Neglected Tropical Diseases (2017)

Whole Genome Amplification and Reduced-Representation Genome Sequencing of Schistosoma japonicum Miracidia.

by Jonathan A Shortt, Daren C Card, Drew R Schield, Yang Liu, Bo Zhong, Todd A Castoe, Elizabeth J Carlton, David D Pollock
Published in PLOS Neglected Tropical Diseases (2017)

Whole genome sequencing distinguishes between relapse and reinfection in recurrent leprosy cases.

by Mariane M A Stefani, Charlotte Avanzi, Samira Bührer-Sékula, Andrej Benjak, Chloé Loiseau, Pushpendra Singh, Maria A A Pontes, Heitor S Gonçalves, Emerith M Hungria, Philippe Busso, Jérémie Piton, Maria I S Silveira, Rossilene Cruz, Antônio Schetinni, Maurício B Costa, Marcos C L Virmond, Suzana M Diorio, Ida M F Dias-Baptista, Patricia S Rosa, Masanori Matsuoka, Maria L F Penna, Stewart T Cole, Gerson O Penna
Published in PLOS Neglected Tropical Diseases (2017)

Whole-genome sequencing for surveillance of antimicrobial resistance in Ecuador: present and future implications

by William Calero-Cáceres, Nimer Ortuño-Gutiérrez, Temmy Sunyoto, Cícero-Armídio Gomes-Dias, Carlos Bastidas-Caldes, Ma. Soledad Ramírez, Anthony D. Harries
Published in Revista Panamericana de Salud Pública (2023)

The genome sequence of Trypanosoma brucei gambiense, causative agent of chronic human african trypanosomiasis.

by Andrew P Jackson, Mandy Sanders, Andrew Berry, Jacqueline McQuillan, Martin A Aslett, Michael A Quail, Bridget Chukualim, Paul Capewell, Annette MacLeod, Sara E Melville, Wendy Gibson, J David Barry, Matthew Berriman, Christiane Hertz-Fowler
Published in PLoS Neglected Tropical Diseases (2010)

Whole genome sequence of Vibrio cholerae directly from dried spotted filter paper.

by Angèle H M Bénard, Etienne Guenou, Maria Fookes, Jerome Ateudjieu, Watipaso Kasambara, Matthew Siever, Stanislas Rebaudet, Jacques Boncy, Paul Adrien, Renaud Piarroux, David A Sack, Nicholas Thomson, Amanda K Debes
Published in PLOS Neglected Tropical Diseases (2019)

Complete genome sequence of a rodent torque teno virus in Hainan Island, China

by Yue Wu, Shan-shan Wang, Yun-chun Chen, Jasper Fuk-Woo Chan, Li-hua Li, Wen-qi Wang, Huan-huan Zhou, You Zhang, Lei Zhang, Xiu-ji Cui, Gang Lu, Kwok-Yung Yuen, Fei-fei Yin
Published in Asian Pacific Journal of Tropical Medicine (2018)

Mitochondrial Genome Sequence of the Scabies Mite Provides Insight into the Genetic Diversity of Individual Scabies Infections.

by Ehtesham Mofiz, Torsten Seemann, Melanie Bahlo, Deborah Holt, Bart J Currie, Katja Fischer, Anthony T Papenfuss
Published in PLOS Neglected Tropical Diseases (2016)

Whole genome sequencing of field isolates provides robust characterization of genetic diversity in Plasmodium vivax.

by Ernest R Chan, Didier Menard, Peter H David, Arsène Ratsimbasoa, Saorin Kim, Pheaktra Chim, Catherine Do, Benoit Witkowski, Odile Mercereau-Puijalon, Peter A Zimmerman, David Serre
Published in PLoS Neglected Tropical Diseases (2012)

Whole genome sequencing reveals the genomic diversity, taxonomic classification, and evolutionary relationships of the genus Nocardia.

by Shuai Xu, Zhenpeng Li, Yuanming Huang, Lichao Han, Yanlin Che, Xuexin Hou, Dan Li, Shihong Fan, Zhenjun Li
Published in PLOS Neglected Tropical Diseases (2021)

Multiple mutations in heterogeneous miltefosine-resistant Leishmania major population as determined by whole genome sequencing.

by Adriano C Coelho, Sébastien Boisvert, Angana Mukherjee, Philippe Leprohon, Jacques Corbeil, Marc Ouellette
Published in PLoS Neglected Tropical Diseases (2012)

An optimized GATK4 pipeline for Plasmodium falciparum whole genome sequencing variant calling and analysis

by Karamoko Niaré, Bryan Greenhouse, Jeffrey A. Bailey
Published in Malaria Journal (2023)

Surveillance of emerging SARS-CoV-2 variants by nanopore technology-based genome sequencing

by J I Abeynayake, G P Chathuranga, MA Y Fernando, M K Sahoo
Published in Asian Pacific Journal of Tropical Medicine (2023)

Genome sequencing reveals coinfection by multiple chikungunya virus genotypes in a recent outbreak in Brazil.

by Lais Ceschini Machado, Mariana Carolina de Morais-Sobral, Tulio de Lima Campos, Mylena Ribeiro Pereira, Maria de Fátima Pessoa Militão de Albuquerque, Clément Gilbert, Rafael Freitas Oliveira Franca, Gabriel Luz Wallau
Published in PLOS Neglected Tropical Diseases (2019)

Using affinity propagation clustering for identifying bacterial clades and subclades with whole-genome sequences of Francisella tularensis

by Anne Busch, Timo Homeier-Bachmann, Mostafa Y. Abdel-Glil, Anja Hackbart, Helmut Hotzel, Herbert Tomaso, Ruifu Yang
Published 2020

Emergence of multi-drug-resistant Mycobacterium tuberculosis in Niger: A snapshot based on whole-genome sequencing

by Zelika Harouna Hamidou, Madjid Morsli, Saidou Mamadou, Michel Drancourt, Jamal Saad
Published 2022