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1by Zhang, Guojie, Li, Bo, Li, Cai, Gilbert, M. Thomas P., Jarvis, Erich D., Wang, Jun“... scaffold size of the assemblies: a high depth group comprising 23 species sequenced at high coverage (>50X...”
Published in GigaScience (2014)
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2by Autenrieth, Marijke, Havenstein, Katja, De Cahsan, Binia, Canitz, Julia, Benke, Harald, Roos, Anna, Pampoulie, Christophe, Sigurðsson, Guðjón Már, Siebert, Ursula, Olsen, Morten Tange, Biard, Vincent, Heide-Jørgensen, Mads Peter, Öztürk, Ayaka Amaha, Öztürk, Bayram, Lawson, John W., Tiedemann, Ralph“... separation of southern North Sea harbour porpoises. We identified genomic outlier regions, i.e., scaffold...”
Published in Conservation Genetics (2024)
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3by da Fonseca, Rute R., Couto, Alvarina, Machado, Andre M., Brejova, Brona, Albertin, Carolin B., Silva, Filipe, Gardner, Paul, Baril, Tobias, Hayward, Alex, Campos, Alexandre, Ribeiro, Ângela M., Barrio-Hernandez, Inigo, Hoving, Henk-Jan, Tafur-Jimenez, Ricardo, Chu, Chong, Frazão, Barbara, Petersen, Bent, Peñaloza, Fernando, Musacchia, Francesco, Alexander, Graham C., Osório, Hugo, Winkelmann, Inger, Simakov, Oleg, Rasmussen, Simon, Rahman, M. Ziaur, Pisani, Davide, Vinther, Jakob, Jarvis, Erich, Zhang, Guojie, Strugnell, Jan M., Castro, L. Filipe C., Fedrigo, Olivier, Patricio, Mateus, Li, Qiye, Rocha, Sara, Antunes, Agostinho, Wu, Yufeng, Ma, Bin, Sanges, Remo, Vinar, Tomas, Blagoev, Blagoy, Sicheritz-Pontén, Thomas, Nielsen, Rasmus, Gilbert, M. Thomas P.“... scaffold N50 of 4.8 Mb. We also present an alternative assembly including 27 Gb raw reads generated using...”
Published in GigaScience (2020)
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4by Prasad, Aparna, Lorenzen, Eline D., Westbury, Michael V.“... cross-species scaffolding. We show that while reference genome phylogenetic distance has an impact...”
Published in Molecular Ecology Resources (2022)
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5by Sinding, Mikkel Holger S., Gopalakrishnan, Shyam, Raundrup, Katrine, Dalén, Love, Threlfall, Jonathan, Gilbert, Tom“.... The majority of the assembly (98.91%) is scaffolded into 40 chromosomal pseudomolecules, with the X and Y sex...”
Published in Wellcome Open Research (2021)
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6by Mckinney, G. J., Seeb, L. W., Larson, W. A., Gomez-Uchida, D., Limborg, Morten Tønsberg, Brieuc, M. S. O., Everett, M. V., Naish, K. A., Waples, R. K., Seeb, J. E.“... annotation and population genomic analyses. We anchored a total of 286 scaffolds from the Atlantic salmon...”
Published in Molecular Ecology Resources (2016)
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