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Second-Generation Linkage Maps for the Pacific Oyster Crassostrea gigas Reveal Errors in Assembly of Genome Scaffolds

by Hedgecock, Dennis, Shin, Grace, Gracey, Andrew Y, Den Berg, David Van, Samanta, Manoj P
Published in G3 Genes|Genomes|Genetics (2015)

De Novo Assembly of a High-Quality Reference Genome for the Horned Lark ( Eremophila alpestris )

by Mason, Nicholas A, Pulgarin, Paulo, Cadena, Carlos Daniel, Lovette, Irby J
Published in G3 Genes|Genomes|Genetics (2020)

A draft reference genome of the red abalone, Haliotis rufescens, for conservation genomics

by Griffiths, Joanna S, Sahasrabudhe, Ruta M, Marimuthu, Mohan P A, Chumchim, Noravit, Nguyen, Oanh H, Beraut, Eric, Escalona, Merly, Whitehead, Andrew
Published in Journal of Heredity (2022)

An Annotated Draft Genome of the Mountain Hare (Lepus timidus)

by Marques, João P, Seixas, Fernando A, Farelo, Liliana, Callahan, Colin M, Good, Jeffrey M, Montgomery, W Ian, Reid, Neil, Alves, Paulo C, Boursot, Pierre, Melo-Ferreira, José
Published in Genome Biology and Evolution (2019)

Chromosomal-level reference genome assembly of the North American wolverine ( Gulo gulo luscus ): a resource for conservation genomics

by Lok, Si, Lau, Timothy N H, Trost, Brett, Tong, Amy H Y, Wintle, Richard F, Engstrom, Mark D, Stacy, Elise, Waits, Lisette P, Scrafford, Matthew, Scherer, Stephen W
Published in G3 Genes|Genomes|Genetics (2022)

A chromosome-level genome assembly for the Pacific oyster Crassostrea gigas

by Peñaloza, Carolina, Gutierrez, Alejandro P, Eöry, Lél, Wang, Shan, Guo, Ximing, Archibald, Alan L, Bean, Tim P, Houston, Ross D
Published in GigaScience (2021)

A chromosome-scale reference genome assembly of the great sand eel, Hyperoplus lanceolatus

by Winter, Sven, de Raad, Jordi, Wolf, Magnus, Coimbra, Raphael T F, de Jong, Menno J, Schöneberg, Yannis, Christoph, Maria, von Klopotek, Hagen, Bach, Katharina, Pashm Foroush, Behgol, Hanack, Wiebke, Kauffeldt, Aaron Hagen, Milz, Tim, Ngetich, Emmanuel Kipruto, Wenz, Christian, Sonnewald, Moritz, Nilsson, Maria Anna, Janke, Axel
Published in Journal of Heredity (2023)

A Beary Good Genome: Haplotype-Resolved, Chromosome-Level Assembly of the Brown Bear ( Ursus arctos )

by Armstrong, Ellie E, Perry, Blair W, Huang, Yongqing, Garimella, Kiran V, Jansen, Heiko T, Robbins, Charles T, Tucker, Nathan R, Kelley, Joanna L
Published in Genome Biology and Evolution (2022)

First Draft Genome of the Sable, Martes zibellina

by Liu, Guangshuai, Zhao, Chao, Xu, Dongming, Zhang, Huanxin, Monakhov, Vladimir, Shang, Shuai, Gao, Xiaodong, Sha, Weilai, Ma, Jianzhang, Zhang, Wei, Tang, Xuexi, Li, Bo, Hua, Yan, Cao, Xiaofang, Liu, Zhen, Zhang, Honghai
Published in Genome Biology and Evolution (2020)

Structural variation during dog domestication: insights from gray wolf and dhole genomes

by Wang, Guo-Dong, Shao, Xiu-Juan, Bai, Bing, Wang, Junlong, Wang, Xiaobo, Cao, Xue, Liu, Yan-Hu, Wang, Xuan, Yin, Ting-Ting, Zhang, Shao-Jie, Lu, Yan, Wang, Zechong, Wang, Lu, Zhao, Wenming, Zhang, Bing, Ruan, Jue, Zhang, Ya-Ping
Published in National Science Review (2018)

A chromosome-level genome assembly for the Rock Ptarmigan ( Lagopus muta)

by Squires, Theodore E, Rödin-Mörch, Patrik, Formenti, Giulio, Tracey, Alan, Abueg, Linelle, Brajuka, Nadolina, Jarvis, Erich, Halapi, Eva C, Melsted, Páll, Höglund, Jacob, Magnússon, Kristinn Pétur
Published in G3: Genes, Genomes, Genetics (2023)

A Reference Genome Assembly of American Bison, Bison bison bison

by Oppenheimer, Jonas, Rosen, Benjamin D, Heaton, Michael P, Vander Ley, Brian L, Shafer, Wade R, Schuetze, Fred T, Stroud, Brad, Kuehn, Larry A, McClure, Jennifer C, Barfield, Jennifer P, Blackburn, Harvey D, Kalbfleisch, Theodore S, Bickhart, Derek M, Davenport, Kimberly M, Kuhn, Kristen L, Green, Richard E, Shapiro, Beth, Smith, Timothy P L
Published in Journal of Heredity (2021)

Chromosome-level assembly reveals a putative Y-autosomal fusion in the sex determination system of the Greenland Halibut ( Reinhardtius hippoglossoides)

by Ferchaud, Anne-Laure, Mérot, Claire, Normandeau, Eric, Ragoussis, Jiannis, Babin, Charles, Djambazian, Haig, Bérubé, Pierre, Audet, Céline, Treble, Margaret, Walkusz, Wojciech, Bernatchez, Louis
Published in G3 Genes|Genomes|Genetics (2021)

A draft genome sequence of the elusive giant squid, Architeuthis dux

by da Fonseca, Rute R, Couto, Alvarina, Machado, Andre M, Brejova, Brona, Albertin, Carolin B, Silva, Filipe, Gardner, Paul, Baril, Tobias, Hayward, Alex, Campos, Alexandre, Ribeiro, Ângela M, Barrio-Hernandez, Inigo, Hoving, Henk-Jan, Tafur-Jimenez, Ricardo, Chu, Chong, Frazão, Barbara, Petersen, Bent, Peñaloza, Fernando, Musacchia, Francesco, Alexander, Graham C, Osório, Hugo, Winkelmann, Inger, Simakov, Oleg, Rasmussen, Simon, Rahman, M Ziaur, Pisani, Davide, Vinther, Jakob, Jarvis, Erich, Zhang, Guojie, Strugnell, Jan M, Castro, L Filipe C, Fedrigo, Olivier, Patricio, Mateus, Li, Qiye, Rocha, Sara, Antunes, Agostinho, Wu, Yufeng, Ma, Bin, Sanges, Remo, Vinar, Tomas, Blagoev, Blagoy, Sicheritz-Ponten, Thomas, Nielsen, Rasmus, Gilbert, M Thomas P
Published in GigaScience (2020)

The Chromosome-Level Genome Assembly of European Grayling Reveals Aspects of a Unique Genome Evolution Process Within Salmonids

by Sävilammi, Tiina, Primmer, Craig R, Varadharajan, Srinidhi, Guyomard, René, Guiguen, Yann, Sandve, Simen R, Vøllestad, L Asbjørn, Papakostas, Spiros, Lien, Sigbjørn
Published in G3 Genes|Genomes|Genetics (2019)

Insights from Hi-C data regarding the Pacific salmon louse ( Lepeophtheirus salmonis) sex-chromosomes

by Flores, Anne-Marie, Christensen, Kris A, Siah, Ahmed, Koop, Ben F
Published in G3: Genes, Genomes, Genetics (2024)

The apricot (Prunus armeniaca L.) genome elucidates Rosaceae evolution and beta-carotenoid synthesis

by Jiang, Fengchao, Zhang, Junhuan, Wang, Sen, Yang, Li, Luo, Yingfeng, Gao, Shenghan, Zhang, Meiling, Wu, Shuangyang, Hu, Songnian, Sun, Haoyuan, Wang, Yuzhu
Published in Horticulture Research (2019)

Canfam_GSD: De novo chromosome-length genome assembly of the German Shepherd Dog (Canis lupus familiaris) using a combination of long reads, optical mapping, and Hi-C

by Field, Matt A, Rosen, Benjamin D, Dudchenko, Olga, Chan, Eva K F, Minoche, Andre E, Edwards, Richard J, Barton, Kirston, Lyons, Ruth J, Tuipulotu, Daniel Enosi, Hayes, Vanessa M, D. Omer, Arina, Colaric, Zane, Keilwagen, Jens, Skvortsova, Ksenia, Bogdanovic, Ozren, Smith, Martin A, Aiden, Erez Lieberman, Smith, Timothy P L, Zammit, Robert A, Ballard, J William O
Published in GigaScience (2020)

The generation of the first chromosome-level de novo genome assembly and the development and validation of a 50K SNP array for the St. John River aquaculture strain of North Americ...

by Gao, Guangtu, Waldbieser, Geoffrey C, Youngblood, Ramey C, Zhao, Dongyan, Pietrak, Michael R, Allen, Melissa S, Stannard, Jason A, Buchanan, John T, Long, Roseanna L, Milligan, Melissa, Burr, Gary, Mejía-Guerra, Katherine, Sheehan, Moira J, Scheffler, Brian E, Rexroad, Caird E, Peterson, Brian C, Palti, Yniv
Published in G3: Genes, Genomes, Genetics (2023)

A high-quality chromosome-level genome assembly of rohu carp, Labeo rohita, and its utilization in SNP-based exploration of gene flow and sex determination

by Arick, Mark A, Grover, Corrinne E, Hsu, Chuan-Yu, Magbanua, Zenaida, Pechanova, Olga, Miller, Emma R, Thrash, Adam, Youngblood, Ramey C, Ezzell, Lauren, Alam, Md Samsul, Benzie, John A H, Hamilton, Matthew G, Karsi, Attila, Lawrence, Mark L, Peterson, Daniel G
Published in G3 Genes|Genomes|Genetics (2023)