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1by Hedgecock, Dennis, Shin, Grace, Gracey, Andrew Y, Den Berg, David Van, Samanta, Manoj P“... to be 616 cM. All but seven of the mapped SNPs map to 618 genome scaffolds; 260 scaffolds contain two...”
Published in G3 Genes|Genomes|Genetics (2015)
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2by Mason, Nicholas A, Pulgarin, Paulo, Cadena, Carlos Daniel, Lovette, Irby J“... assembly pipeline, we generated a 1.04 Gb assembly comprised of 2713 scaffolds, with a largest scaffold...”
Published in G3 Genes|Genomes|Genetics (2020)
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3by Griffiths, Joanna S, Sahasrabudhe, Ruta M, Marimuthu, Mohan P A, Chumchim, Noravit, Nguyen, Oanh H, Beraut, Eric, Escalona, Merly, Whitehead, Andrew“... and Dovetail Omni-C data to generate a scaffold-level assembly. The assembly comprises 616 scaffolds for a...”
Published in Journal of Heredity (2022)
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4by Marques, João P, Seixas, Fernando A, Farelo, Liliana, Callahan, Colin M, Good, Jeffrey M, Montgomery, W Ian, Reid, Neil, Alves, Paulo C, Boursot, Pierre, Melo-Ferreira, José“... sequencing (77x coverage). The assembly contained 32,294 scaffolds with a total length of 2.7 Gb and a...”
Published in Genome Biology and Evolution (2019)
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5by Lok, Si, Lau, Timothy N H, Trost, Brett, Tong, Amy H Y, Wintle, Richard F, Engstrom, Mark D, Stacy, Elise, Waits, Lisette P, Scrafford, Matthew, Scherer, Stephen W“... chromosomal-level assembly was generated by scaffolding against two chromosomal-level Mustelidae reference...”
Published in G3 Genes|Genomes|Genetics (2022)
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6by Peñaloza, Carolina, Gutierrez, Alejandro P, Eöry, Lél, Wang, Shan, Guo, Ximing, Archibald, Alan L, Bean, Tim P, Houston, Ross D“... used to generate an initial assembly, which was then scaffolded into 10 pseudo-chromosomes using both...”
Published in GigaScience (2021)
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7by Winter, Sven, de Raad, Jordi, Wolf, Magnus, Coimbra, Raphael T F, de Jong, Menno J, Schöneberg, Yannis, Christoph, Maria, von Klopotek, Hagen, Bach, Katharina, Pashm Foroush, Behgol, Hanack, Wiebke, Kauffeldt, Aaron Hagen, Milz, Tim, Ngetich, Emmanuel Kipruto, Wenz, Christian, Sonnewald, Moritz, Nilsson, Maria Anna, Janke, Axel“... length of 808.5 Mbp, of which 97.1% were anchored into 24 chromosome-scale scaffolds using proximity...”
Published in Journal of Heredity (2023)
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8by Armstrong, Ellie E, Perry, Blair W, Huang, Yongqing, Garimella, Kiran V, Jansen, Heiko T, Robbins, Charles T, Tucker, Nathan R, Kelley, Joanna L“... Gigabases (Gb) with a scaffold and contig N50 length of 70.08 and 43.94 Megabases (Mb), respectively...”
Published in Genome Biology and Evolution (2022)
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9by Liu, Guangshuai, Zhao, Chao, Xu, Dongming, Zhang, Huanxin, Monakhov, Vladimir, Shang, Shuai, Gao, Xiaodong, Sha, Weilai, Ma, Jianzhang, Zhang, Wei, Tang, Xuexi, Li, Bo, Hua, Yan, Cao, Xiaofang, Liu, Zhen, Zhang, Honghai“... genome is 2.42 Gb, consisting of 15,814 scaffolds with a scaffold N50 of 5.20 Mb. Searches for complete...”
Published in Genome Biology and Evolution (2020)
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10by Wang, Guo-Dong, Shao, Xiu-Juan, Bai, Bing, Wang, Junlong, Wang, Xiaobo, Cao, Xue, Liu, Yan-Hu, Wang, Xuan, Yin, Ting-Ting, Zhang, Shao-Jie, Lu, Yan, Wang, Zechong, Wang, Lu, Zhao, Wenming, Zhang, Bing, Ruan, Jue, Zhang, Ya-Ping“...) and dhole (Cuon alpinus) with scaffold N50 of 6.04 Mb and 3.96 Mb, respectively. Sequence alignment...”
Published in National Science Review (2018)
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11by Squires, Theodore E, Rödin-Mörch, Patrik, Formenti, Giulio, Tracey, Alan, Abueg, Linelle, Brajuka, Nadolina, Jarvis, Erich, Halapi, Eva C, Melsted, Páll, Höglund, Jacob, Magnússon, Kristinn Pétur“... Iceland. The total size of the genome is 1.03 Gb with a scaffold N50 of 71.23 Mb and a contig N50 of 17.91...”
Published in G3: Genes, Genomes, Genetics (2023)
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12by Oppenheimer, Jonas, Rosen, Benjamin D, Heaton, Michael P, Vander Ley, Brian L, Shafer, Wade R, Schuetze, Fred T, Stroud, Brad, Kuehn, Larry A, McClure, Jennifer C, Barfield, Jennifer P, Blackburn, Harvey D, Kalbfleisch, Theodore S, Bickhart, Derek M, Davenport, Kimberly M, Kuhn, Kristen L, Green, Richard E, Shapiro, Beth, Smith, Timothy P L“..., with a total length of 2.65 Gb across 775 scaffolds (839 contigs) and a scaffold N50 of 87.8 Mb. Our...”
Published in Journal of Heredity (2021)
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13by Ferchaud, Anne-Laure, Mérot, Claire, Normandeau, Eric, Ragoussis, Jiannis, Babin, Charles, Djambazian, Haig, Bérubé, Pierre, Audet, Céline, Treble, Margaret, Walkusz, Wojciech, Bernatchez, Louis“... to 1594 scaffolds (scaffold N50 = 25 Mb) with 96% of its total length distributed among 24 chromosomes...”
Published in G3 Genes|Genomes|Genetics (2021)
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14by da Fonseca, Rute R, Couto, Alvarina, Machado, Andre M, Brejova, Brona, Albertin, Carolin B, Silva, Filipe, Gardner, Paul, Baril, Tobias, Hayward, Alex, Campos, Alexandre, Ribeiro, Ângela M, Barrio-Hernandez, Inigo, Hoving, Henk-Jan, Tafur-Jimenez, Ricardo, Chu, Chong, Frazão, Barbara, Petersen, Bent, Peñaloza, Fernando, Musacchia, Francesco, Alexander, Graham C, Osório, Hugo, Winkelmann, Inger, Simakov, Oleg, Rasmussen, Simon, Rahman, M Ziaur, Pisani, Davide, Vinther, Jakob, Jarvis, Erich, Zhang, Guojie, Strugnell, Jan M, Castro, L Filipe C, Fedrigo, Olivier, Patricio, Mateus, Li, Qiye, Rocha, Sara, Antunes, Agostinho, Wu, Yufeng, Ma, Bin, Sanges, Remo, Vinar, Tomas, Blagoev, Blagoy, Sicheritz-Ponten, Thomas, Nielsen, Rasmus, Gilbert, M Thomas P“... scaffold N50 of 4.8 Mb. We also present an alternative assembly including 27 Gb raw reads generated using...”
Published in GigaScience (2020)
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15by Sävilammi, Tiina, Primmer, Craig R, Varadharajan, Srinidhi, Guyomard, René, Guiguen, Yann, Sandve, Simen R, Vøllestad, L Asbjørn, Papakostas, Spiros, Lien, Sigbjørn“.... To achieve this, we first generated relatively long genomic scaffolds by using a previously published draft...”
Published in G3 Genes|Genomes|Genetics (2019)
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16by Flores, Anne-Marie, Christensen, Kris A, Siah, Ahmed, Koop, Ben F“.... salmonis using Hi-C data. The previous version placed contigs/scaffolds using an Atlantic salmon louse...”
Published in G3: Genes, Genomes, Genetics (2024)
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17The apricot (Prunus armeniaca L.) genome elucidates Rosaceae evolution and beta-carotenoid synthesisby Jiang, Fengchao, Zhang, Junhuan, Wang, Sen, Yang, Li, Luo, Yingfeng, Gao, Shenghan, Zhang, Meiling, Wu, Shuangyang, Hu, Songnian, Sun, Haoyuan, Wang, Yuzhu“... for chromosome scaffolding. The assembled genome size was 221.9 Mb, with a contig NG50 size of 1.02 Mb. Scaffolds...”
Published in Horticulture Research (2019)
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18by Field, Matt A, Rosen, Benjamin D, Dudchenko, Olga, Chan, Eva K F, Minoche, Andre E, Edwards, Richard J, Barton, Kirston, Lyons, Ruth J, Tuipulotu, Daniel Enosi, Hayes, Vanessa M, D. Omer, Arina, Colaric, Zane, Keilwagen, Jens, Skvortsova, Ksenia, Bogdanovic, Ozren, Smith, Martin A, Aiden, Erez Lieberman, Smith, Timothy P L, Zammit, Robert A, Ballard, J William O“... Mb contig N50), containing far fewer gaps (306 vs 23,876) and fewer scaffolds (429 vs 3,310) than...”
Published in GigaScience (2020)
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19by Gao, Guangtu, Waldbieser, Geoffrey C, Youngblood, Ramey C, Zhao, Dongyan, Pietrak, Michael R, Allen, Melissa S, Stannard, Jason A, Buchanan, John T, Long, Roseanna L, Milligan, Melissa, Burr, Gary, Mejía-Guerra, Katherine, Sheehan, Moira J, Scheffler, Brian E, Rexroad, Caird E, Peterson, Brian C, Palti, Yniv“... was used to concatenate the contigs into scaffolds. The assembly contains 1,755 scaffolds and only 1,253...”
Published in G3: Genes, Genomes, Genetics (2023)
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20by Arick, Mark A, Grover, Corrinne E, Hsu, Chuan-Yu, Magbanua, Zenaida, Pechanova, Olga, Miller, Emma R, Thrash, Adam, Youngblood, Ramey C, Ezzell, Lauren, Alam, Md Samsul, Benzie, John A H, Hamilton, Matthew G, Karsi, Attila, Lawrence, Mark L, Peterson, Daniel G“... consisting of 25 chromosomes and 2,844 unplaced scaffolds. Notably, while approximately half the size...”
Published in G3 Genes|Genomes|Genetics (2023)
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