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1

Quantifying sequence proportions in a DNA‐based diet study using Ion Torrent amplicon sequencing: which counts count?

by Deagle, Bruce E., Thomas, Austen C., Shaffer, Amanda K., Trites, Andrew W., Jarman, Simon N.
Published in Molecular Ecology Resources (2013)
“... using an Ion Torrent PGM ™. For a given set of bioinformatic parameters, there was generally low...”

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2

Data from: Quantifying sequence proportions in a DNA-based diet study using Ion Torrent amplicon sequencing: which counts count?

by Deagle, Bruce E., Thomas, Austen C., Shaffer, Amanda K., Trites, Andrew W., Jarman, Simon N.
Published 2021
“... using an Ion Torrent PGM™. For a given set of bioinformatic parameters, there was generally low...”

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3

Data from: Quantifying sequence proportions in a DNA-based diet study using Ion Torrent amplicon sequencing: which counts count?

by Deagle, Bruce E., Thomas, Austen C., Shaffer, Amanda K., Trites, Andrew W., Jarman, Simon N.
Published 2013
“... Torrent PGM™. For a given set of bioinformatic parameters, there was generally low variability between...”

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4

Data from: Quantifying sequence proportions in a DNA-based diet study using Ion Torrent amplicon sequencing: which counts count?

by Deagle, Bruce E., Thomas, Austen C., Shaffer, Amanda K., Trites, Andrew W., Jarman, Simon N.
Published 2013
“... Torrent PGM™. For a given set of bioinformatic parameters, there was generally low variability between...”

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5

Data from: Quantifying sequence proportions in a DNA-based diet study using Ion Torrent amplicon sequencing: which counts count?

by Deagle, Bruce E., Thomas, Austen C., Shaffer, Amanda K., Trites, Andrew W., Jarman, Simon N.
Published 2013
“... Visibility: public Usage notes Ion Torrent diet data FASTQ sequence files and additional data described...”

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6

Data from: Quantifying sequence proportions in a DNA-based diet study using Ion Torrent amplicon sequencing: which counts count?

by Deagle, Bruce E., Thomas, Austen C., Shaffer, Amanda K., Trites, Andrew W., Jarman, Simon N.
“... using an Ion Torrent PGM™. For a given set of bioinformatic parameters, there was generally low...”

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7

Data from: Quantifying sequence proportions in a DNA-based diet study using Ion Torrent amplicon sequencing: which counts count?

by Deagle, Bruce E., Thomas, Austen C., Shaffer, Amanda K., Trites, Andrew W., Jarman, Simon N.
Published 2013
“... Torrent PGM™. For a given set of bioinformatic parameters, there was generally low variability between...”

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8

Data from: Quantifying sequence proportions in a DNA-based diet study using Ion Torrent amplicon sequencing: which counts count? ...

by Deagle, Bruce E., Thomas, Austen C., Shaffer, Amanda K., Trites, Andrew W., Jarman, Simon N.
Published 2020
“... using an Ion Torrent PGM™. For a given set of bioinformatic parameters, there was generally low...”

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9

Data from: Quantifying sequence proportions in a DNA-based diet study using Ion Torrent amplicon sequencing: which counts count? ...

by Deagle, Bruce E., Thomas, Austen C., Shaffer, Amanda K., Trites, Andrew W., Jarman, Simon N.
Published 2013
“... Torrent PGM™. For a given set of bioinformatic parameters, there was generally low variability between...”

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10

Data from: Quantifying sequence proportions in a DNA-based diet study using Ion Torrent amplicon sequencing: which counts count?

by Deagle, Bruce E., Thomas, Austen C., Shaffer, Amanda K., Trites, Andrew W., Jarman, Simon N.
Published 2021
“... using an Ion Torrent PGM™. For a given set of bioinformatic parameters, there was generally low...”

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Select result number 11
11

Data from: Improving accuracy of DNA diet estimates using food tissue control materials and an evaluation of proxies for digestion bias ...

by Thomas, Austen C., Jarman, Simon N., Haman, Katherine H., Trites, Andrew W., Deagle, Bruce E.
Published 2013
“... Torrent PGM©, we sequenced prey DNA amplified from scats of captive harbour seals (Phoca vitulina) fed a...”

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12

Data from: Improving accuracy of DNA diet estimates using food tissue control materials and an evaluation of proxies for digestion bias

by Thomas, Austen C., Jarman, Simon N., Haman, Katherine H., Trites, Andrew W., Deagle, Bruce E.
Published 2013
“... and quality scores that resulted from Ion Torrent amplicon sequencing of a fish tissue mixture that matched...”

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13

Tissue mix DNA amplicon pool (.fastq)

by Thomas, Austen C., Deagle, Bruce E., Jarman, Simon N., Haman, Katherine H., Trites, Andrew W.
Published 2013
“...This file contains the DNA sequences and quality scores that resulted from Ion Torrent amplicon...”

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14

Seal scat DNA amplicon pool (.fastq)

by Thomas, Austen C., Deagle, Bruce E., Jarman, Simon N., Haman, Katherine H., Trites, Andrew W.
Published 2013
“...This file contains the DNA sequences and quality scores that resulted from Ion Torrent amplicon...”

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15

Data from: Improving accuracy of DNA diet estimates using food tissue control materials and an evaluation of proxies for digestion bias

by Thomas, Austen C., Jarman, Simon N., Haman, Katherine H., Trites, Andrew W., Deagle, Bruce E.
“... number. Using the Ion Torrent PGM©, we sequenced prey DNA amplified from scats of captive harbour seals...”

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16

Data from: Improving accuracy of DNA diet estimates using food tissue control materials and an evaluation of proxies for digestion bias

by Thomas, Austen C., Jarman, Simon N., Haman, Katherine H., Trites, Andrew W., Deagle, Bruce E.
Published 2013
“... Torrent PGM©, we sequenced prey DNA amplified from scats of captive harbour seals (Phoca vitulina) fed a...”

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17

Data from: Improving accuracy of DNA diet estimates using food tissue control materials and an evaluation of proxies for digestion bias ...

by Thomas, Austen C., Jarman, Simon N., Haman, Katherine H., Trites, Andrew W., Deagle, Bruce E.
Published 2020
“... number. Using the Ion Torrent PGM©, we sequenced prey DNA amplified from scats of captive harbour seals...”

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18

Data from: Improving accuracy of DNA diet estimates using food tissue control materials and an evaluation of proxies for digestion bias

by Thomas, Austen C., Jarman, Simon N., Haman, Katherine H., Trites, Andrew W., Deagle, Bruce E.
Published 2021
“... number. Using the Ion Torrent PGM©, we sequenced prey DNA amplified from scats of captive harbour seals...”

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19

Animal diet quantification using high-throughput DNA sequencing: Moving from precision to accuracy

by Thomas, Austen C.
Published 2014
“... Torrent PGM©, we sequenced prey DNA amplified from scats of captive harbour seals (Phoca vitulina) fed a...”

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Text
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20

Data from: Improving accuracy of DNA diet estimates using food tissue control materials and an evaluation of proxies for digestion bias

by Thomas, Austen C., Jarman, Simon N., Haman, Katherine H., Trites, Andrew W., Deagle, Bruce E.
Published 2013
“... Torrent PGM©, we sequenced prey DNA amplified from scats of captive harbour seals (Phoca vitulina) fed a...”

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Article in Journal/Newspaper