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1

Comparative genomics and evolution of conserved noncoding elements (CNE) in rainbow trout

by Moghadam, Hooman K, Ferguson, Moira M, Danzmann, Roy G
Published 2009
“... this hypothesis, we investigated the chromosomal positions of subset of CNE in the rainbow trout genome using a...”

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2

Comparative genomics and evolution of conserved noncoding elements (CNE) in rainbow trout

by Moghadam, Hooman K, Ferguson, Moira M, Danzmann, Roy G
Published in BMC Genomics (2009)
“... this hypothesis, we investigated the chromosomal positions of subset of CNE in the rainbow trout genome using a...”

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3

Distribution of temperature tolerance quantitative trait loci in Arctic charr (Salvelinus alpinus) and inferred homologies in rainbow trout (Oncorhynchus mykiss).

by Somorjai, Ildiko M L, Danzmann, Roy G, Ferguson, Moira M
Published 2003
“... containing UTT QTL in rainbow trout (Oncorhynchus mykiss). Additional marginal associations were detected...”

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4

Distribution of Temperature Tolerance Quantitative Trait Loci in Arctic Charr ( Salvelinus alpinus ) and Inferred Homologies in Rainbow Trout ( Oncorhynchus mykiss )

by Somorjai, Ildiko M L, Danzmann, Roy G, Ferguson, Moira M
Published in Genetics (2003)
“... containing UTT QTL in rainbow trout (Oncorhynchus mykiss). Additional marginal associations were detected...”

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5

Distribution of ancestral proto-Actinopterygian chromosome arms within the genomes of 4R-derivative salmonid fishes (Rainbow trout and Atlantic salmon)

by Danzmann, Roy G, Davidson, Evelyn A, Ferguson, Moira M, Gharbi, Karim, Koop, Ben F, Hoyheim, Bjorn, Lien, Sigbjorn, Lubieniecki, Krzysztof P, Moghadam, Hooman K, Park, Jay, Phillips, Ruth B, Davidson, William S
Published in BMC Genomics (2008)
“... and rainbow trout based upon their comparative syntenies with two model species of 3R ray-finned fishes...”

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6

Distribution of ancestral proto-Actinopterygian chromosome arms within the genomes of 4R-derivative salmonid fishes (Rainbow trout and Atlantic salmon)

by Danzmann, Roy G, Davidson, Evelyn A, Ferguson, Moira M, Gharbi, Karim, Koop, Ben F, Hoyheim, Bjorn, Lien, Sigbjorn, Lubieniecki, Krzysztof P, Moghadam, Hooman K, Park, Jay, Phillips, Ruth B, Davidson, William S
Published 2008
“... and rainbow trout based upon their comparative syntenies with two model species of 3R ray-finned fishes...”

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7

Distribution of ancestral proto-Actinopterygian chromosome arms within the genomes of 4R-derivative salmonid fishes (Rainbow trout and Atlantic salmon)

by Danzmann, Roy G, Davidson, Evelyn A, Ferguson, Moira M, Gharbi, Karim, Koop, Ben F, Hoyheim, Bjorn, Lien, Sigbjorn, Lubieniecki, Krzysztof P, Moghadam, Hooman K, Park, Jay, Phillips, Ruth B, Davidson, William S
Published in BMC Genomics (2008)
“... and rainbow trout based upon their comparative syntenies with two model species of 3R ray-finned fishes...”

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8

Distribution of ancestral proto-Actinopterygian chromosome arms within the genomes of 4R-derivative salmonid fishes (Rainbow trout and Atlantic salmon)

by Danzmann, Roy G, Davidson, Evelyn A, Ferguson, Moira M, Gharbi, Karim, Koop, Ben F, Hoyheim, Bjorn, Lien, Sigbjorn, Lubieniecki, Krzysztof P, Moghadam, Hooman K, Park, Jay, Phillips, Ruth B, Davidson, William S
Published in BMC Genomics (2008)

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9

Differentiation of rainbow trout (Oncorhynchus mykiss) populations in Lake Ontario...

by O'Connell, Michael, Danzmann, Roy G, Cornuet, Jean-Marie, Wright, Jonathan M, Ferguson, Moira M
Published in Canadian Journal of Fisheries and Aquatic Sciences (1997)
“... genomic library of rainbow trout (Oncorhynchus mykiss) DNA. Primers were designed for five microsatellite...”

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10

Genomic arrangement of salinity tolerance QTLs in salmonids: A comparative analysis of Atlantic salmon (Salmo salar) with Arctic charr (Salvelinus alpinus) and rainbow trout (Oncorhynchus mykiss)

by Norman, Joseph D, Robinson, Mike, Glebe, Brian, Ferguson, Moira M, Danzmann, Roy G
Published 2012
Subjects: “...Rainbow trout...”

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11

Genome evolution in the fish family salmonidae: generation of a brook charr genetic map and comparisons among charrs (Arctic charr and brook charr) with rainbow trout

by Timusk, Evan R, Ferguson, Moira M, Moghadam, Hooman K, Norman, Joseph D, Wilson, Chris C, Danzmann, Roy G
Published in BMC Genetics (2011)
“... charr, to make comparisons with the genetic map of rainbow trout. Although not all chromosome arms...”

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12

Genome evolution in the fish family salmonidae: generation of a brook charr genetic map and comparisons among charrs (Arctic charr and brook charr) with rainbow trout

by Timusk, Evan R, Ferguson, Moira M, Moghadam, Hooman K, Norman, Joseph D, Wilson, Chris C, Danzmann, Roy G
Published in BMC Genetics (2011)

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13

Genomic arrangement of salinity tolerance QTLs in salmonids: A comparative analysis of Atlantic salmon (Salmo salar) with Arctic charr (Salvelinus alpinus) and rainbow trout (Oncorhynchus mykiss)

by Norman, Joseph D, Robinson, Mike, Glebe, Brian, Ferguson, Moira M, Danzmann, Roy G
Published in BMC Genomics (2012)

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14

Genomic arrangement of salinity tolerance QTLs in salmonids: A comparative analysis of Atlantic salmon (Salmo salar) with Arctic charr (Salvelinus alpinus) and rainbow trout (Oncorhynchus mykiss)

by Norman, Joseph D, Robinson, Mike, Glebe, Brian, Ferguson, Moira M, Danzmann, Roy G
Published in BMC Genomics (2012)

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15

Assignment of Atlantic salmon (Salmo salar) linkage groups to specific chromosomes: Conservation of large syntenic blocks corresponding to whole chromosome arms in rainbow trout (Oncorhynchus mykiss)

by Phillips, Ruth B, Keatley, Kimberly A, Morasch, Matthew R, Ventura, Abigail B, Lubieniecki, Krzysztof P, Koop, Ben F, Danzmann, Roy G, Davidson, William S
Published in BMC Genetics (2009)

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16

Assignment of Atlantic salmon (Salmo salar)linkage groups to specific chromosomes: Conservation of large syntenic blocks corresponding to whole chromosome arms in rainbow trout (Oncorhynchus mykiss)

by Phillips, Ruth B, Keatley, Kimberly A, Morasch, Matthew R, Ventura, Abigail B, Lubieniecki, Krzysztof P, Koop, Ben F, Danzmann, Roy G, Davidson, William S
Published 2009
“... salmonids (e.g., rainbow trout). The Atlantic salmon is an exception among the salmonids as it has 72–74...”

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17

Assignment of Atlantic salmon (Salmo salar) linkage groups to specific chromosomes: Conservation of large syntenic blocks corresponding to whole chromosome arms in rainbow trout (Oncorhynchus mykiss)

by Phillips, Ruth B, Keatley, Kimberly A, Morasch, Matthew R, Ventura, Abigail B, Lubieniecki, Krzysztof P, Koop, Ben F, Danzmann, Roy G, Davidson, William S
Published in BMC Genetics (2009)
“... salmonids (e.g., rainbow trout). The Atlantic salmon is an exception among the salmonids as it has 72–74...”

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18

A comparative analysis of the rainbow trout genome with 2 other species of fish (Arctic charr...

by Danzmann, Roy G, Cairney, Margaret, Davidson, William S, Ferguson, Moira M, Gharbi, Karim, Guyomard, Rene, Holm, Lars-Erik, Leder, Erica, Okamoto, Nobuaki, Ozaki, Akiyuki, Rexroad III, Caird E, Sakamoto, Takashi, Taggart, John B, Woram, Rachael A
Published in Genome (2005)
“...We updated the genetic map of rainbow trout (Oncorhynchus mykiss) for 2 outcrossed mapping panels...”

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19

A Linkage Map for Brown Trout ( Salmo trutta ): Chromosome Homeologies and Comparative Genome Organization With Other Salmonid Fish

by Gharbi, Karim, Gautier, Angélique, Danzmann, Roy G, Gharbi, Sonia, Sakamoto, Takashi, Høyheim, Bjørn, Taggart, John B, Cairney, Margaret, Powell, Richard, Krieg, Francine, Okamoto, Nobuaki, Ferguson, Moira M, Holm, Lars-Erik, Guyomard, René
Published in Genetics (2006)
“... (Salmo salar), rainbow trout (Oncorhynchus mykiss), and Arctic char (Salvelinus alpinus). Overall, we...”

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20

Clock genes and their genomic distributions in three species of salmonid fishes: Associations with genes regulating sexual maturation and cell cycling

by Paibomesai, Marion I, Moghadam, Hooman K, Ferguson, Moira M, Danzmann, Roy G
Published 2010
“...) and mapped using family-based indels/SNPs in rainbow trout (RT)( Oncorhynchus mykiss ), Arctic charr (AC...”

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