18S rRNA V9 taxonomic classifier

18S metabarcoding databases and naive-bayes classifierspecific to the V9 region. Builtfromthe PR2 v5.0.0database using Qiime2 (version 2021.2). Primers used: 1391f:GTACACACCGCCCGTC EukBr:TGATCCTTCTGCAGGTTCACCTAC File Description pr2_seqs.qza |. Full length PR2 v5.0.0 sequences pr2_tax.qza | Taxa for...

Full description

Bibliographic Details
Main Authors: Anderson, Sean, Silliman, Katherine, Thompson, Luke
Format: Other/Unknown Material
Language:unknown
Published: Zenodo 2023
Subjects:
metabarcoding
reference database
18S rRNA
Ocean acidification
Online Access:https://doi.org/10.5281/zenodo.8392706
id ftzenodo:oai:zenodo.org:8392706
record_format openpolar
spelling ftzenodo:oai:zenodo.org:8392706 2024-09-15T18:27:55+00:00 18S rRNA V9 taxonomic classifier Anderson, Sean Silliman, Katherine Thompson, Luke 2023-09-29 https://doi.org/10.5281/zenodo.8392706 unknown Zenodo https://doi.org/10.5281/zenodo.8392705 https://doi.org/10.5281/zenodo.8392706 oai:zenodo.org:8392706 info:eu-repo/semantics/openAccess Creative Commons Attribution 4.0 International https://creativecommons.org/licenses/by/4.0/legalcode metabarcoding reference database 18S rRNA info:eu-repo/semantics/other 2023 ftzenodo https://doi.org/10.5281/zenodo.839270610.5281/zenodo.8392705 2024-07-25T23:18:06Z 18S metabarcoding databases and naive-bayes classifierspecific to the V9 region. Builtfromthe PR2 v5.0.0database using Qiime2 (version 2021.2). Primers used: 1391f:GTACACACCGCCCGTC EukBr:TGATCCTTCTGCAGGTTCACCTAC File Description pr2_seqs.qza |. Full length PR2 v5.0.0 sequences pr2_tax.qza | Taxa for PR2 v5.0.0 database refseqs_V9.qza. | Sequences for 18S V9 (primers 1391f, EukBrr), extracted from PR2 SSU v5.0.0, generated by qiime2-2021.2 (forward compatible) classifier_V9.qza | Unweighted (uniform) naive-bayes classifier for 18S V9 extracted from PR2 SSU v5.0.0, generated by qiime2-2021.2 "This work was supported by award 21392 to the Northern Gulf Institute from NOAA/OAR Ocean Acidification Program." Other/Unknown Material Ocean acidification Zenodo
institution Open Polar
collection Zenodo
op_collection_id ftzenodo
language unknown
topic metabarcoding
reference database
18S rRNA
spellingShingle metabarcoding
reference database
18S rRNA
Anderson, Sean
Silliman, Katherine
Thompson, Luke
18S rRNA V9 taxonomic classifier
topic_facet metabarcoding
reference database
18S rRNA
description 18S metabarcoding databases and naive-bayes classifierspecific to the V9 region. Builtfromthe PR2 v5.0.0database using Qiime2 (version 2021.2). Primers used: 1391f:GTACACACCGCCCGTC EukBr:TGATCCTTCTGCAGGTTCACCTAC File Description pr2_seqs.qza |. Full length PR2 v5.0.0 sequences pr2_tax.qza | Taxa for PR2 v5.0.0 database refseqs_V9.qza. | Sequences for 18S V9 (primers 1391f, EukBrr), extracted from PR2 SSU v5.0.0, generated by qiime2-2021.2 (forward compatible) classifier_V9.qza | Unweighted (uniform) naive-bayes classifier for 18S V9 extracted from PR2 SSU v5.0.0, generated by qiime2-2021.2 "This work was supported by award 21392 to the Northern Gulf Institute from NOAA/OAR Ocean Acidification Program."
format Other/Unknown Material
author Anderson, Sean
Silliman, Katherine
Thompson, Luke
author_facet Anderson, Sean
Silliman, Katherine
Thompson, Luke
author_sort Anderson, Sean
title 18S rRNA V9 taxonomic classifier
title_short 18S rRNA V9 taxonomic classifier
title_full 18S rRNA V9 taxonomic classifier
title_fullStr 18S rRNA V9 taxonomic classifier
title_full_unstemmed 18S rRNA V9 taxonomic classifier
title_sort 18s rrna v9 taxonomic classifier
publisher Zenodo
publishDate 2023
url https://doi.org/10.5281/zenodo.8392706
genre Ocean acidification
genre_facet Ocean acidification
op_relation https://doi.org/10.5281/zenodo.8392705
https://doi.org/10.5281/zenodo.8392706
oai:zenodo.org:8392706
op_rights info:eu-repo/semantics/openAccess
Creative Commons Attribution 4.0 International
https://creativecommons.org/licenses/by/4.0/legalcode
op_doi https://doi.org/10.5281/zenodo.839270610.5281/zenodo.8392705
_version_ 1810469207407591424

Similar Items