16S V4-V4 taxonomy classifier
16S metabarcoding databases and naive-bayes classifierspecific to the V4-V5 region. Builtfromthe Silva 138.1 SSU Ref NR 99 database using Qiime2 (version 2021.2). Primers used: EMP 16S 515f:GTGYCAGCMGCCGCGGTAA EMP 16S 926r:CCGYCAATTYMTTTRAGTTT <caption>File description</caption> File Des...
| Main Authors: | , , |
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| Format: | Other/Unknown Material |
| Language: | unknown |
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Zenodo
2023
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| Subjects: | |
| Online Access: | https://doi.org/10.5281/zenodo.8392695 |
| _version_ | 1821673846163374080 |
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| author | Anderson, Sean Silliman, Katherine Thompson, Luke |
| author_facet | Anderson, Sean Silliman, Katherine Thompson, Luke |
| author_sort | Anderson, Sean |
| collection | Zenodo |
| description | 16S metabarcoding databases and naive-bayes classifierspecific to the V4-V5 region. Builtfromthe Silva 138.1 SSU Ref NR 99 database using Qiime2 (version 2021.2). Primers used: EMP 16S 515f:GTGYCAGCMGCCGCGGTAA EMP 16S 926r:CCGYCAATTYMTTTRAGTTT <caption>File description</caption> File Description silva-138-99-seqs.qza Full length Silva 138.1 SSU 99 sequences silva-138-99-tax.qza Taxa for full length Silva 138.1 SSU 99 database refseqs_V4-V5.qza Sequences for 16S V4-V5 (primers 515f, 926r), extracted from Silva 138.1 SSU 99, generated by qiime2-2021.2 (forward compatible) classifier_V4-V5.qza Unweighted (uniform) naive-bayes classifier for 16S V4-V5 (primers 515f, 926r) extracted from Silva 138.1 SSU 99, generated by qiime2-2021.2 "This work was supported by award 21392 to the Northern Gulf Institute from NOAA/OAR Ocean Acidification Program." |
| format | Other/Unknown Material |
| genre | Ocean acidification |
| genre_facet | Ocean acidification |
| id | ftzenodo:oai:zenodo.org:8392695 |
| institution | Open Polar |
| language | unknown |
| op_collection_id | ftzenodo |
| op_doi | https://doi.org/10.5281/zenodo.839269510.5281/zenodo.8392694 |
| op_relation | https://doi.org/10.5281/zenodo.8392694 https://doi.org/10.5281/zenodo.8392695 oai:zenodo.org:8392695 |
| op_rights | info:eu-repo/semantics/openAccess Creative Commons Attribution 4.0 International https://creativecommons.org/licenses/by/4.0/legalcode |
| publishDate | 2023 |
| publisher | Zenodo |
| record_format | openpolar |
| spelling | ftzenodo:oai:zenodo.org:8392695 2025-01-17T00:05:16+00:00 16S V4-V4 taxonomy classifier Anderson, Sean Silliman, Katherine Thompson, Luke 2023-09-29 https://doi.org/10.5281/zenodo.8392695 unknown Zenodo https://doi.org/10.5281/zenodo.8392694 https://doi.org/10.5281/zenodo.8392695 oai:zenodo.org:8392695 info:eu-repo/semantics/openAccess Creative Commons Attribution 4.0 International https://creativecommons.org/licenses/by/4.0/legalcode metabarcoding reference database 16S rRNA naive-bayes classifier info:eu-repo/semantics/other 2023 ftzenodo https://doi.org/10.5281/zenodo.839269510.5281/zenodo.8392694 2024-12-06T16:19:49Z 16S metabarcoding databases and naive-bayes classifierspecific to the V4-V5 region. Builtfromthe Silva 138.1 SSU Ref NR 99 database using Qiime2 (version 2021.2). Primers used: EMP 16S 515f:GTGYCAGCMGCCGCGGTAA EMP 16S 926r:CCGYCAATTYMTTTRAGTTT <caption>File description</caption> File Description silva-138-99-seqs.qza Full length Silva 138.1 SSU 99 sequences silva-138-99-tax.qza Taxa for full length Silva 138.1 SSU 99 database refseqs_V4-V5.qza Sequences for 16S V4-V5 (primers 515f, 926r), extracted from Silva 138.1 SSU 99, generated by qiime2-2021.2 (forward compatible) classifier_V4-V5.qza Unweighted (uniform) naive-bayes classifier for 16S V4-V5 (primers 515f, 926r) extracted from Silva 138.1 SSU 99, generated by qiime2-2021.2 "This work was supported by award 21392 to the Northern Gulf Institute from NOAA/OAR Ocean Acidification Program." Other/Unknown Material Ocean acidification Zenodo |
| spellingShingle | metabarcoding reference database 16S rRNA naive-bayes classifier Anderson, Sean Silliman, Katherine Thompson, Luke 16S V4-V4 taxonomy classifier |
| title | 16S V4-V4 taxonomy classifier |
| title_full | 16S V4-V4 taxonomy classifier |
| title_fullStr | 16S V4-V4 taxonomy classifier |
| title_full_unstemmed | 16S V4-V4 taxonomy classifier |
| title_short | 16S V4-V4 taxonomy classifier |
| title_sort | 16s v4-v4 taxonomy classifier |
| topic | metabarcoding reference database 16S rRNA naive-bayes classifier |
| topic_facet | metabarcoding reference database 16S rRNA naive-bayes classifier |
| url | https://doi.org/10.5281/zenodo.8392695 |