Fine-scale environmentally associated spatial structure of Lumpfish ( Cyclopterus lumpus) across the Northwest Atlantic

Lumpfish, Cyclopterus lumpus , have historically been harvested throughout Atlantic Canada and are increasingly in demand as a solution to controlling sea lice in Atlantic salmon farms – a process which involves both the domestication and the transfer of lumpfish between geographic regions. Here, we...

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Published in:Scientific Reports
Main Authors: Langille, Barbara, Kess, Tony, Brachmann, Matthew, Nugent, Cameron, Messmer, Amber, Duffy, Steven, Holborn, Melissa, Van Wyngaarden, Mallory, Knutsen, Tim, Kent, Matthew, Boyce, Danny, Gregory, Robert, Gauthier, Johanne, Fairchild, Elizabeth, Pietrak, Michael, Eddy, Stephen, Garcia de Leaniz, Carlos, Consuegra, Sofia, Whittaker, Ben, Bentzen, Paul, Bradbury, Ian
Format: Other/Unknown Material
Language:unknown
Published: Zenodo 2023
Subjects:
Spatial structure
environmental adaptation
Genomics
whole genome resequencing
Population structure
Cleaner fish
Atlantic salmon
Newfoundland
Northwest Atlantic
Online Access:https://doi.org/10.5061/dryad.q83bk3jpq
id ftzenodo:oai:zenodo.org:8339631
record_format openpolar
spelling ftzenodo:oai:zenodo.org:8339631 2024-09-15T17:56:26+00:00 Fine-scale environmentally associated spatial structure of Lumpfish ( Cyclopterus lumpus) across the Northwest Atlantic Langille, Barbara Kess, Tony Brachmann, Matthew Nugent, Cameron Messmer, Amber Duffy, Steven Holborn, Melissa Van Wyngaarden, Mallory Knutsen, Tim Kent, Matthew Boyce, Danny Gregory, Robert Gauthier, Johanne Fairchild, Elizabeth Pietrak, Michael Eddy, Stephen Garcia de Leaniz, Carlos Consuegra, Sofia Whittaker, Ben Bentzen, Paul Bradbury, Ian 2023-09-12 https://doi.org/10.5061/dryad.q83bk3jpq unknown Zenodo https://zenodo.org/communities/dryad https://doi.org/10.5061/dryad.q83bk3jpq oai:zenodo.org:8339631 info:eu-repo/semantics/openAccess Creative Commons Zero v1.0 Universal https://creativecommons.org/publicdomain/zero/1.0/legalcode Spatial structure environmental adaptation Genomics whole genome resequencing Population structure Cleaner fish info:eu-repo/semantics/other 2023 ftzenodo https://doi.org/10.5061/dryad.q83bk3jpq 2024-07-26T18:01:40Z Lumpfish, Cyclopterus lumpus , have historically been harvested throughout Atlantic Canada and are increasingly in demand as a solution to controlling sea lice in Atlantic salmon farms – a process which involves both the domestication and the transfer of lumpfish between geographic regions. Here, we have 70K SNP array data and whole genome re-sequencing data (WGS) for a variety of sample sites across the Northwest Atlantic. We mainly used R to manipulate data files, however, also used PGDspider to convert file formats, as well as plink v1.9. Funding provided by: Fisheries and Oceans Canada Crossref Funder Registry ID: http://dx.doi.org/10.13039/501100000041 Award Number: Funding provided by: Aquaculture Collaborative Research and Development Program* Crossref Funder Registry ID: Award Number: Funding provided by: Newfoundland Aquaculture Industry Association* Crossref Funder Registry ID: Award Number: Funding provided by: Grieg NL Seafarms Ltd* Crossref Funder Registry ID: Award Number: Funding provided by: Cooke Aquaculture Inc* Crossref Funder Registry ID: Award Number: Funding provided by: Mowi Canada East* Crossref Funder Registry ID: Award Number: Funding provided by: Program for Aquaculture Regulatory Research* Crossref Funder Registry ID: Award Number: Other/Unknown Material Atlantic salmon Newfoundland Northwest Atlantic Zenodo Scientific Reports 13 1
institution Open Polar
collection Zenodo
op_collection_id ftzenodo
language unknown
topic Spatial structure
environmental adaptation
Genomics
whole genome resequencing
Population structure
Cleaner fish
spellingShingle Spatial structure
environmental adaptation
Genomics
whole genome resequencing
Population structure
Cleaner fish
Langille, Barbara
Kess, Tony
Brachmann, Matthew
Nugent, Cameron
Messmer, Amber
Duffy, Steven
Holborn, Melissa
Van Wyngaarden, Mallory
Knutsen, Tim
Kent, Matthew
Boyce, Danny
Gregory, Robert
Gauthier, Johanne
Fairchild, Elizabeth
Pietrak, Michael
Eddy, Stephen
Garcia de Leaniz, Carlos
Consuegra, Sofia
Whittaker, Ben
Bentzen, Paul
Bradbury, Ian
Fine-scale environmentally associated spatial structure of Lumpfish ( Cyclopterus lumpus) across the Northwest Atlantic
topic_facet Spatial structure
environmental adaptation
Genomics
whole genome resequencing
Population structure
Cleaner fish
description Lumpfish, Cyclopterus lumpus , have historically been harvested throughout Atlantic Canada and are increasingly in demand as a solution to controlling sea lice in Atlantic salmon farms – a process which involves both the domestication and the transfer of lumpfish between geographic regions. Here, we have 70K SNP array data and whole genome re-sequencing data (WGS) for a variety of sample sites across the Northwest Atlantic. We mainly used R to manipulate data files, however, also used PGDspider to convert file formats, as well as plink v1.9. Funding provided by: Fisheries and Oceans Canada Crossref Funder Registry ID: http://dx.doi.org/10.13039/501100000041 Award Number: Funding provided by: Aquaculture Collaborative Research and Development Program* Crossref Funder Registry ID: Award Number: Funding provided by: Newfoundland Aquaculture Industry Association* Crossref Funder Registry ID: Award Number: Funding provided by: Grieg NL Seafarms Ltd* Crossref Funder Registry ID: Award Number: Funding provided by: Cooke Aquaculture Inc* Crossref Funder Registry ID: Award Number: Funding provided by: Mowi Canada East* Crossref Funder Registry ID: Award Number: Funding provided by: Program for Aquaculture Regulatory Research* Crossref Funder Registry ID: Award Number:
format Other/Unknown Material
author Langille, Barbara
Kess, Tony
Brachmann, Matthew
Nugent, Cameron
Messmer, Amber
Duffy, Steven
Holborn, Melissa
Van Wyngaarden, Mallory
Knutsen, Tim
Kent, Matthew
Boyce, Danny
Gregory, Robert
Gauthier, Johanne
Fairchild, Elizabeth
Pietrak, Michael
Eddy, Stephen
Garcia de Leaniz, Carlos
Consuegra, Sofia
Whittaker, Ben
Bentzen, Paul
Bradbury, Ian
author_facet Langille, Barbara
Kess, Tony
Brachmann, Matthew
Nugent, Cameron
Messmer, Amber
Duffy, Steven
Holborn, Melissa
Van Wyngaarden, Mallory
Knutsen, Tim
Kent, Matthew
Boyce, Danny
Gregory, Robert
Gauthier, Johanne
Fairchild, Elizabeth
Pietrak, Michael
Eddy, Stephen
Garcia de Leaniz, Carlos
Consuegra, Sofia
Whittaker, Ben
Bentzen, Paul
Bradbury, Ian
author_sort Langille, Barbara
title Fine-scale environmentally associated spatial structure of Lumpfish ( Cyclopterus lumpus) across the Northwest Atlantic
title_short Fine-scale environmentally associated spatial structure of Lumpfish ( Cyclopterus lumpus) across the Northwest Atlantic
title_full Fine-scale environmentally associated spatial structure of Lumpfish ( Cyclopterus lumpus) across the Northwest Atlantic
title_fullStr Fine-scale environmentally associated spatial structure of Lumpfish ( Cyclopterus lumpus) across the Northwest Atlantic
title_full_unstemmed Fine-scale environmentally associated spatial structure of Lumpfish ( Cyclopterus lumpus) across the Northwest Atlantic
title_sort fine-scale environmentally associated spatial structure of lumpfish ( cyclopterus lumpus) across the northwest atlantic
publisher Zenodo
publishDate 2023
url https://doi.org/10.5061/dryad.q83bk3jpq
genre Atlantic salmon
Newfoundland
Northwest Atlantic
genre_facet Atlantic salmon
Newfoundland
Northwest Atlantic
op_relation https://zenodo.org/communities/dryad
https://doi.org/10.5061/dryad.q83bk3jpq
oai:zenodo.org:8339631
op_rights info:eu-repo/semantics/openAccess
Creative Commons Zero v1.0 Universal
https://creativecommons.org/publicdomain/zero/1.0/legalcode
op_doi https://doi.org/10.5061/dryad.q83bk3jpq
container_title Scientific Reports
container_volume 13
container_issue 1
_version_ 1810432643642163200

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