Data and scripts for "Experimental evidence on the influence of root-associated fungi on plant growth along altitude"

These files include the input data and scripts to reproduce the results from the article "Experimental evidence on the influence of root-associated fungi on plant growth along altitude". The fungal OTU and environmental data are stored in the "data_meta_otu.Rdata" file, and the s...

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Main Authors: Burg Skylar, Ovaskainen Otso, Furneaux Brendan, Ivanova Natalia, Abrahamyan Arusyak, Niittynen Pekka, Somervuo Panu, Abrego Nerea
Format: Article in Journal/Newspaper
Language:unknown
Published: 2023
Subjects:
Online Access:https://zenodo.org/record/8321442
https://doi.org/10.5281/zenodo.8321442
id ftzenodo:oai:zenodo.org:8321442
record_format openpolar
spelling ftzenodo:oai:zenodo.org:8321442 2023-10-25T01:35:51+02:00 Data and scripts for "Experimental evidence on the influence of root-associated fungi on plant growth along altitude" Burg Skylar Ovaskainen Otso Furneaux Brendan Ivanova Natalia Abrahamyan Arusyak Niittynen Pekka Somervuo Panu Abrego Nerea 2023-09-06 https://zenodo.org/record/8321442 https://doi.org/10.5281/zenodo.8321442 unknown info:eu-repo/grantAgreement/AKA//346492/ info:eu-repo/grantAgreement/EC/H2020/856506/ info:eu-repo/grantAgreement/EC/HE/101057437/ info:eu-repo/grantAgreement/AKA//336212/ info:eu-repo/grantAgreement/AKA//342374/ info:eu-repo/grantAgreement/EC/HE/101059492/ info:eu-repo/grantAgreement/AKA//345110/ info:eu-repo/grantAgreement/AKA//308651/ doi:10.5281/zenodo.8321441 https://zenodo.org/record/8321442 https://doi.org/10.5281/zenodo.8321442 oai:zenodo.org:8321442 info:eu-repo/semantics/openAccess https://creativecommons.org/licenses/by/4.0/legalcode info:eu-repo/semantics/article publication-article 2023 ftzenodo https://doi.org/10.5281/zenodo.832144210.5281/zenodo.8321441 2023-09-26T22:58:49Z These files include the input data and scripts to reproduce the results from the article "Experimental evidence on the influence of root-associated fungi on plant growth along altitude". The fungal OTU and environmental data are stored in the "data_meta_otu.Rdata" file, and the scripts for performing the joint species distribution modelling described in the article are the files "S1-S5". The scripts should be run in the subsequent order from S1 to S5 in R software. As extensively explained in the main document, we investigated whether variations in root-associated fungal (RAF) community composition along altitudinal gradients influence plant growth at high altitudes, where both plants and fungi face harsher abiotic conditions. These data correspond to a translocation experiment between pairs of high and low altitude populations of Bistorta vivipara along three arctic altitudinal gradients in Kilpisjärvi. To separate the impact of shifting fungal communities from the overall influence of changing abiotic conditions, we used a root barrier to prevent new colonizations by RAF following translocation. To characterize the RAF communities, we applied DNA barcoding to the root samples using the ITS2 region. Through the utilization of joint species distribution modeling, we assessed the relationship between changes in plant functional traits resulting from experimental treatments and the corresponding changes in the RAF communities. Article in Journal/Newspaper Arctic Kilpisjärvi Zenodo Arctic Kilpisjärvi ENVELOPE(20.767,20.767,69.034,69.034)
institution Open Polar
collection Zenodo
op_collection_id ftzenodo
language unknown
description These files include the input data and scripts to reproduce the results from the article "Experimental evidence on the influence of root-associated fungi on plant growth along altitude". The fungal OTU and environmental data are stored in the "data_meta_otu.Rdata" file, and the scripts for performing the joint species distribution modelling described in the article are the files "S1-S5". The scripts should be run in the subsequent order from S1 to S5 in R software. As extensively explained in the main document, we investigated whether variations in root-associated fungal (RAF) community composition along altitudinal gradients influence plant growth at high altitudes, where both plants and fungi face harsher abiotic conditions. These data correspond to a translocation experiment between pairs of high and low altitude populations of Bistorta vivipara along three arctic altitudinal gradients in Kilpisjärvi. To separate the impact of shifting fungal communities from the overall influence of changing abiotic conditions, we used a root barrier to prevent new colonizations by RAF following translocation. To characterize the RAF communities, we applied DNA barcoding to the root samples using the ITS2 region. Through the utilization of joint species distribution modeling, we assessed the relationship between changes in plant functional traits resulting from experimental treatments and the corresponding changes in the RAF communities.
format Article in Journal/Newspaper
author Burg Skylar
Ovaskainen Otso
Furneaux Brendan
Ivanova Natalia
Abrahamyan Arusyak
Niittynen Pekka
Somervuo Panu
Abrego Nerea
spellingShingle Burg Skylar
Ovaskainen Otso
Furneaux Brendan
Ivanova Natalia
Abrahamyan Arusyak
Niittynen Pekka
Somervuo Panu
Abrego Nerea
Data and scripts for "Experimental evidence on the influence of root-associated fungi on plant growth along altitude"
author_facet Burg Skylar
Ovaskainen Otso
Furneaux Brendan
Ivanova Natalia
Abrahamyan Arusyak
Niittynen Pekka
Somervuo Panu
Abrego Nerea
author_sort Burg Skylar
title Data and scripts for "Experimental evidence on the influence of root-associated fungi on plant growth along altitude"
title_short Data and scripts for "Experimental evidence on the influence of root-associated fungi on plant growth along altitude"
title_full Data and scripts for "Experimental evidence on the influence of root-associated fungi on plant growth along altitude"
title_fullStr Data and scripts for "Experimental evidence on the influence of root-associated fungi on plant growth along altitude"
title_full_unstemmed Data and scripts for "Experimental evidence on the influence of root-associated fungi on plant growth along altitude"
title_sort data and scripts for "experimental evidence on the influence of root-associated fungi on plant growth along altitude"
publishDate 2023
url https://zenodo.org/record/8321442
https://doi.org/10.5281/zenodo.8321442
long_lat ENVELOPE(20.767,20.767,69.034,69.034)
geographic Arctic
Kilpisjärvi
geographic_facet Arctic
Kilpisjärvi
genre Arctic
Kilpisjärvi
genre_facet Arctic
Kilpisjärvi
op_relation info:eu-repo/grantAgreement/AKA//346492/
info:eu-repo/grantAgreement/EC/H2020/856506/
info:eu-repo/grantAgreement/EC/HE/101057437/
info:eu-repo/grantAgreement/AKA//336212/
info:eu-repo/grantAgreement/AKA//342374/
info:eu-repo/grantAgreement/EC/HE/101059492/
info:eu-repo/grantAgreement/AKA//345110/
info:eu-repo/grantAgreement/AKA//308651/
doi:10.5281/zenodo.8321441
https://zenodo.org/record/8321442
https://doi.org/10.5281/zenodo.8321442
oai:zenodo.org:8321442
op_rights info:eu-repo/semantics/openAccess
https://creativecommons.org/licenses/by/4.0/legalcode
op_doi https://doi.org/10.5281/zenodo.832144210.5281/zenodo.8321441
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