VoltView 1.0 to analyze all-optical Voltron imaging with Example Data

VoltVew 1.0 is an analysis package written in MATLAB by the Fuzik Laboratory at Karolinska Institute."VoltView_README.pdf" describes the installation of VoltView 1.0 and its dependencies (MATLAB 2021, bfmatlab, Anaconda3, Cellpose 1.0 in Python 3.8). We included example files: The ".C...

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Bibliographic Details
Main Author: Janos Fuzik
Format: Other/Unknown Material
Language:English
Published: Zenodo 2023
Subjects:
Voltage-Seq
VoltView
Voltage imaging
Orca
Online Access:https://doi.org/10.5281/zenodo.8030176
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spelling ftzenodo:oai:zenodo.org:8030176 2024-09-15T18:28:55+00:00 VoltView 1.0 to analyze all-optical Voltron imaging with Example Data Janos Fuzik 2023-06-12 https://doi.org/10.5281/zenodo.8030176 eng eng Zenodo https://www.biorxiv.org/content/10.1101/2022.11.09.515875v2 https://doi.org/10.5281/zenodo.8030175 https://doi.org/10.5281/zenodo.8030176 oai:zenodo.org:8030176 info:eu-repo/semantics/openAccess Creative Commons Attribution 4.0 International https://creativecommons.org/licenses/by/4.0/legalcode Voltage-Seq VoltView Voltage imaging info:eu-repo/semantics/other 2023 ftzenodo https://doi.org/10.5281/zenodo.803017610.5281/zenodo.8030175 2024-07-26T22:19:45Z VoltVew 1.0 is an analysis package written in MATLAB by the Fuzik Laboratory at Karolinska Institute."VoltView_README.pdf" describes the installation of VoltView 1.0 and its dependencies (MATLAB 2021, bfmatlab, Anaconda3, Cellpose 1.0 in Python 3.8). We included example files: The ".CXD" video files were generated with a Hamamatsu Orca Fusion-BT camera. Imaging frame rate was 600 Hz. Imaging magnification was 10X. Each video file contains an all-optical voltage imaging experiment looking at periaqueductal gray (PAG) neurons during optogenetic stimulation of ventromedial hypothalamic terminals in the PAG. Each experiment has 7 sweeps, each sweep has a baseline (0.5 s), a 20 Hz optogenetic terminal stimulation with 2 ms light pulses (1s), and a follow up (~0.9 s). Other details and parameters are described in the manuscript "Voltage-Seq: all-optical postsynaptic connectome-guided single-cell transcriptomics" (https://www.biorxiv.org/content/10.1101/2022.11.09.515875v2) Other/Unknown Material Orca Zenodo
institution Open Polar
collection Zenodo
op_collection_id ftzenodo
language English
topic Voltage-Seq
VoltView
Voltage imaging
spellingShingle Voltage-Seq
VoltView
Voltage imaging
Janos Fuzik
VoltView 1.0 to analyze all-optical Voltron imaging with Example Data
topic_facet Voltage-Seq
VoltView
Voltage imaging
description VoltVew 1.0 is an analysis package written in MATLAB by the Fuzik Laboratory at Karolinska Institute."VoltView_README.pdf" describes the installation of VoltView 1.0 and its dependencies (MATLAB 2021, bfmatlab, Anaconda3, Cellpose 1.0 in Python 3.8). We included example files: The ".CXD" video files were generated with a Hamamatsu Orca Fusion-BT camera. Imaging frame rate was 600 Hz. Imaging magnification was 10X. Each video file contains an all-optical voltage imaging experiment looking at periaqueductal gray (PAG) neurons during optogenetic stimulation of ventromedial hypothalamic terminals in the PAG. Each experiment has 7 sweeps, each sweep has a baseline (0.5 s), a 20 Hz optogenetic terminal stimulation with 2 ms light pulses (1s), and a follow up (~0.9 s). Other details and parameters are described in the manuscript "Voltage-Seq: all-optical postsynaptic connectome-guided single-cell transcriptomics" (https://www.biorxiv.org/content/10.1101/2022.11.09.515875v2)
format Other/Unknown Material
author Janos Fuzik
author_facet Janos Fuzik
author_sort Janos Fuzik
title VoltView 1.0 to analyze all-optical Voltron imaging with Example Data
title_short VoltView 1.0 to analyze all-optical Voltron imaging with Example Data
title_full VoltView 1.0 to analyze all-optical Voltron imaging with Example Data
title_fullStr VoltView 1.0 to analyze all-optical Voltron imaging with Example Data
title_full_unstemmed VoltView 1.0 to analyze all-optical Voltron imaging with Example Data
title_sort voltview 1.0 to analyze all-optical voltron imaging with example data
publisher Zenodo
publishDate 2023
url https://doi.org/10.5281/zenodo.8030176
genre Orca
genre_facet Orca
op_relation https://www.biorxiv.org/content/10.1101/2022.11.09.515875v2
https://doi.org/10.5281/zenodo.8030175
https://doi.org/10.5281/zenodo.8030176
oai:zenodo.org:8030176
op_rights info:eu-repo/semantics/openAccess
Creative Commons Attribution 4.0 International
https://creativecommons.org/licenses/by/4.0/legalcode
op_doi https://doi.org/10.5281/zenodo.803017610.5281/zenodo.8030175
_version_ 1810470344741355520

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