hdr-bgnn/Morphology-analysis: Version 1.0.0

Release created to populate Zenodo. This code baseproduces a presence-absence table (default), create landmarks (optional), visualization oflandmarks (optional), and extracts measurements (optional) from a segmented fish image (see BGNN-trait-segmentation ). Secondarily, this repository provides a f...

Full description

Bibliographic Details
Main Authors: Thibault Tabarin, John Bradley, Meghan Balk, Hilmar Lapp
Format: Other/Unknown Material
Language:unknown
Published: Zenodo 2023
Subjects:
Online Access:https://doi.org/10.5281/zenodo.7987697
Description
Summary:Release created to populate Zenodo. This code baseproduces a presence-absence table (default), create landmarks (optional), visualization oflandmarks (optional), and extracts measurements (optional) from a segmented fish image (see BGNN-trait-segmentation ). Secondarily, this repository provides a framework for creating modularized tools by using classes. A Docker container image of this codebase and its dependencies is automatically built and published each time a new release is published. The Docker container isolates dependencies and facilitates reproducible and version-tagged integration into Imageomics workflows (see for example the BGNN Core Workflow ). This tool was originally developed for the Minnows Project .