Data and code for: Building use-inspired species distribution models: using multiple data types to examine and improve model performance
Species distribution models (SDMs) are becoming an important tool for marine conservation and management. Yet while there is an increasing diversity and volume of marine biodiversity data for training SDMs, little practical guidance is available on how to leverage distinct data types to build robust...
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ftzenodo:oai:zenodo.org:7986725 2024-09-15T18:26:24+00:00 Data and code for: Building use-inspired species distribution models: using multiple data types to examine and improve model performance Braun, Camrin Arostegui, Martin Farchadi, Nima Alexander, Michael Afonso, Pedro Allyn, Andrew Bograd, Steven Brodie, Stephanie Crear, Daniel Culhane, Emmett Curtis, Tobey Hazen, Elliott Kerney, Alex Lezama-Ochoa, Nerea Mills, Katherine Pugh, Dylan Queiroz, Nuno Scott, James Skomal, Gregory Sims, David Thorrold, Simon Welch, Heather Young-Morse, Riley Lewison, Rebecca 2023-05-30 https://doi.org/10.5061/dryad.h44j0zpr2 unknown Zenodo https://doi.org/10.5281/zenodo.7971532 https://zenodo.org/communities/dryad https://doi.org/10.5061/dryad.h44j0zpr2 oai:zenodo.org:7986725 info:eu-repo/semantics/openAccess Creative Commons Zero v1.0 Universal https://creativecommons.org/publicdomain/zero/1.0/legalcode species distribution models prediction Ecological forecasting spatial ecology highly migratory species Climate Change info:eu-repo/semantics/other 2023 ftzenodo https://doi.org/10.5061/dryad.h44j0zpr210.5281/zenodo.7971532 2024-07-25T09:55:30Z Species distribution models (SDMs) are becoming an important tool for marine conservation and management. Yet while there is an increasing diversity and volume of marine biodiversity data for training SDMs, little practical guidance is available on how to leverage distinct data types to build robust models. We explored the effect of different data types on the fit, performance and predictive ability of SDMs by comparing models trained with four data types for a heavily exploited pelagic fish, the blue shark ( Prionace glauca ), in the Northwest Atlantic: two fishery-dependent (conventional mark-recapture tags, fisheries observer records) and two fishery-independent (satellite-linked electronic tags, pop-up archival tags). We found that all four data types can result in robust models, but differences among spatial predictions highlighted the need to consider ecological realism in model selection and interpretation regardless of data type. Differences among models were primarily attributed to biases in how each data type, and the associated representation of absences, sampled the environment and summarized the resulting species distributions. Outputs from model ensembles and a model trained on all pooled data both proved effective for combining inferences across data types and provided more ecologically realistic predictions than individual models. Our results provide valuable guidance for practitioners developing SDMs. With increasing access to diverse data sources, future work should further develop truly integrative modeling approaches that can explicitly leverage strengths of individual data types while statistically accounting for limitations, such as sampling biases. Funding provided by: NASA Headquarters Crossref Funder Registry ID: http://dx.doi.org/10.13039/100017437 Award Number: 80NSSC19K0187 Other/Unknown Material Northwest Atlantic Zenodo |
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ftzenodo |
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species distribution models prediction Ecological forecasting spatial ecology highly migratory species Climate Change |
spellingShingle |
species distribution models prediction Ecological forecasting spatial ecology highly migratory species Climate Change Braun, Camrin Arostegui, Martin Farchadi, Nima Alexander, Michael Afonso, Pedro Allyn, Andrew Bograd, Steven Brodie, Stephanie Crear, Daniel Culhane, Emmett Curtis, Tobey Hazen, Elliott Kerney, Alex Lezama-Ochoa, Nerea Mills, Katherine Pugh, Dylan Queiroz, Nuno Scott, James Skomal, Gregory Sims, David Thorrold, Simon Welch, Heather Young-Morse, Riley Lewison, Rebecca Data and code for: Building use-inspired species distribution models: using multiple data types to examine and improve model performance |
topic_facet |
species distribution models prediction Ecological forecasting spatial ecology highly migratory species Climate Change |
description |
Species distribution models (SDMs) are becoming an important tool for marine conservation and management. Yet while there is an increasing diversity and volume of marine biodiversity data for training SDMs, little practical guidance is available on how to leverage distinct data types to build robust models. We explored the effect of different data types on the fit, performance and predictive ability of SDMs by comparing models trained with four data types for a heavily exploited pelagic fish, the blue shark ( Prionace glauca ), in the Northwest Atlantic: two fishery-dependent (conventional mark-recapture tags, fisheries observer records) and two fishery-independent (satellite-linked electronic tags, pop-up archival tags). We found that all four data types can result in robust models, but differences among spatial predictions highlighted the need to consider ecological realism in model selection and interpretation regardless of data type. Differences among models were primarily attributed to biases in how each data type, and the associated representation of absences, sampled the environment and summarized the resulting species distributions. Outputs from model ensembles and a model trained on all pooled data both proved effective for combining inferences across data types and provided more ecologically realistic predictions than individual models. Our results provide valuable guidance for practitioners developing SDMs. With increasing access to diverse data sources, future work should further develop truly integrative modeling approaches that can explicitly leverage strengths of individual data types while statistically accounting for limitations, such as sampling biases. Funding provided by: NASA Headquarters Crossref Funder Registry ID: http://dx.doi.org/10.13039/100017437 Award Number: 80NSSC19K0187 |
format |
Other/Unknown Material |
author |
Braun, Camrin Arostegui, Martin Farchadi, Nima Alexander, Michael Afonso, Pedro Allyn, Andrew Bograd, Steven Brodie, Stephanie Crear, Daniel Culhane, Emmett Curtis, Tobey Hazen, Elliott Kerney, Alex Lezama-Ochoa, Nerea Mills, Katherine Pugh, Dylan Queiroz, Nuno Scott, James Skomal, Gregory Sims, David Thorrold, Simon Welch, Heather Young-Morse, Riley Lewison, Rebecca |
author_facet |
Braun, Camrin Arostegui, Martin Farchadi, Nima Alexander, Michael Afonso, Pedro Allyn, Andrew Bograd, Steven Brodie, Stephanie Crear, Daniel Culhane, Emmett Curtis, Tobey Hazen, Elliott Kerney, Alex Lezama-Ochoa, Nerea Mills, Katherine Pugh, Dylan Queiroz, Nuno Scott, James Skomal, Gregory Sims, David Thorrold, Simon Welch, Heather Young-Morse, Riley Lewison, Rebecca |
author_sort |
Braun, Camrin |
title |
Data and code for: Building use-inspired species distribution models: using multiple data types to examine and improve model performance |
title_short |
Data and code for: Building use-inspired species distribution models: using multiple data types to examine and improve model performance |
title_full |
Data and code for: Building use-inspired species distribution models: using multiple data types to examine and improve model performance |
title_fullStr |
Data and code for: Building use-inspired species distribution models: using multiple data types to examine and improve model performance |
title_full_unstemmed |
Data and code for: Building use-inspired species distribution models: using multiple data types to examine and improve model performance |
title_sort |
data and code for: building use-inspired species distribution models: using multiple data types to examine and improve model performance |
publisher |
Zenodo |
publishDate |
2023 |
url |
https://doi.org/10.5061/dryad.h44j0zpr2 |
genre |
Northwest Atlantic |
genre_facet |
Northwest Atlantic |
op_relation |
https://doi.org/10.5281/zenodo.7971532 https://zenodo.org/communities/dryad https://doi.org/10.5061/dryad.h44j0zpr2 oai:zenodo.org:7986725 |
op_rights |
info:eu-repo/semantics/openAccess Creative Commons Zero v1.0 Universal https://creativecommons.org/publicdomain/zero/1.0/legalcode |
op_doi |
https://doi.org/10.5061/dryad.h44j0zpr210.5281/zenodo.7971532 |
_version_ |
1810466882085453824 |