Metadata for: Environmental adaptations by the intertidal Antarctic cyanobacterium Halotia branconii CENA392 as revealed using long-read genome sequencing

Antarctica poses numerous challenges to life such as cold shock, low nutrient concentrations and periodic desiccation over a wide range of extreme temperatures. Cyanobacteria survive this harsh environment having evolved adaptive metabolic plasticity to become the dominant primary producers. The typ...

Full description

Bibliographic Details
Main Authors: Dextro, Rafael B., Delbaje, Endrews, Freitas, Paloma N. N., Geraldes, Vanessa, Pinto, Ernani, Long, Paul F., Fiore, Marli F.
Format: Other/Unknown Material
Language:unknown
Published: Zenodo 2023
Subjects:
Online Access:https://doi.org/10.5061/dryad.k98sf7mb1
id ftzenodo:oai:zenodo.org:7894016
record_format openpolar
spelling ftzenodo:oai:zenodo.org:7894016 2024-09-15T17:45:51+00:00 Metadata for: Environmental adaptations by the intertidal Antarctic cyanobacterium Halotia branconii CENA392 as revealed using long-read genome sequencing Dextro, Rafael B. Delbaje, Endrews Freitas, Paloma N. N. Geraldes, Vanessa Pinto, Ernani Long, Paul F. Fiore, Marli F. 2023-05-03 https://doi.org/10.5061/dryad.k98sf7mb1 unknown Zenodo https://doi.org/10.1099/ijs.0.070078-0 https://doi.org/10.5281/zenodo.7650767 https://zenodo.org/communities/dryad https://doi.org/10.5061/dryad.k98sf7mb1 oai:zenodo.org:7894016 info:eu-repo/semantics/openAccess Creative Commons Zero v1.0 Universal https://creativecommons.org/publicdomain/zero/1.0/legalcode cyanobacterium phylogeny Antarctica HPLC-MS chlorophyll a carotenoids genome info:eu-repo/semantics/other 2023 ftzenodo https://doi.org/10.5061/dryad.k98sf7mb110.1099/ijs.0.070078-010.5281/zenodo.7650767 2024-07-26T23:25:29Z Antarctica poses numerous challenges to life such as cold shock, low nutrient concentrations and periodic desiccation over a wide range of extreme temperatures. Cyanobacteria survive this harsh environment having evolved adaptive metabolic plasticity to become the dominant primary producers. The type strain cyanobacterium Halotia branconii CENA392 was isolated from an Antarctic intertidal seashore. The complete circular genome of this strain is presented herein, which was assembled using long sequence reads. The genome encoded some stress-related genes associated with low-temperature adaptation and biosynthesis of mycosporine-like amino acid (MAA) photoprotective compounds. Empirical experimentation demonstrated constitutive production of the MAA porphyra-334 and total carotenoids without exposure to low temperatures or ultraviolet radiation stress. Phylogenetic analysis provided insights on the taxonomic placement and the evolutionary history of some annotated genes. These data exemplify the importance of generating complete quality genome sequences of microorganisms isolated from extreme intertidal environments, facilitating in-depth evaluation of ecological and taxonomic inferences. The data are available in .sh and .xlsx files. The first can be opened with any basic text reader (such as Notepad or File Reader) while the second is a spreadsheet from Office Excel. Funding provided by: Fundação de Amparo à Pesquisa do Estado de São Paulo Crossref Funder Registry ID: http://dx.doi.org/10.13039/501100001807 Award Number: 2013/07914-8 Funding provided by: Fundação de Amparo à Pesquisa do Estado de São Paulo Crossref Funder Registry ID: http://dx.doi.org/10.13039/501100001807 Award Number: 2021/00149-0 Funding provided by: Fundação de Amparo à Pesquisa do Estado de São Paulo Crossref Funder Registry ID: http://dx.doi.org/10.13039/501100001807 Award Number: 2016/14227-5 Funding provided by: Universidade de São Paulo Crossref Funder Registry ID: http://dx.doi.org/10.13039/501100005639 Award Number: 13.1.1502.9.8 ... Other/Unknown Material Antarc* Antarctic Antarctica Zenodo
institution Open Polar
collection Zenodo
op_collection_id ftzenodo
language unknown
topic cyanobacterium
phylogeny
Antarctica
HPLC-MS
chlorophyll a
carotenoids
genome
spellingShingle cyanobacterium
phylogeny
Antarctica
HPLC-MS
chlorophyll a
carotenoids
genome
Dextro, Rafael B.
Delbaje, Endrews
Freitas, Paloma N. N.
Geraldes, Vanessa
Pinto, Ernani
Long, Paul F.
Fiore, Marli F.
Metadata for: Environmental adaptations by the intertidal Antarctic cyanobacterium Halotia branconii CENA392 as revealed using long-read genome sequencing
topic_facet cyanobacterium
phylogeny
Antarctica
HPLC-MS
chlorophyll a
carotenoids
genome
description Antarctica poses numerous challenges to life such as cold shock, low nutrient concentrations and periodic desiccation over a wide range of extreme temperatures. Cyanobacteria survive this harsh environment having evolved adaptive metabolic plasticity to become the dominant primary producers. The type strain cyanobacterium Halotia branconii CENA392 was isolated from an Antarctic intertidal seashore. The complete circular genome of this strain is presented herein, which was assembled using long sequence reads. The genome encoded some stress-related genes associated with low-temperature adaptation and biosynthesis of mycosporine-like amino acid (MAA) photoprotective compounds. Empirical experimentation demonstrated constitutive production of the MAA porphyra-334 and total carotenoids without exposure to low temperatures or ultraviolet radiation stress. Phylogenetic analysis provided insights on the taxonomic placement and the evolutionary history of some annotated genes. These data exemplify the importance of generating complete quality genome sequences of microorganisms isolated from extreme intertidal environments, facilitating in-depth evaluation of ecological and taxonomic inferences. The data are available in .sh and .xlsx files. The first can be opened with any basic text reader (such as Notepad or File Reader) while the second is a spreadsheet from Office Excel. Funding provided by: Fundação de Amparo à Pesquisa do Estado de São Paulo Crossref Funder Registry ID: http://dx.doi.org/10.13039/501100001807 Award Number: 2013/07914-8 Funding provided by: Fundação de Amparo à Pesquisa do Estado de São Paulo Crossref Funder Registry ID: http://dx.doi.org/10.13039/501100001807 Award Number: 2021/00149-0 Funding provided by: Fundação de Amparo à Pesquisa do Estado de São Paulo Crossref Funder Registry ID: http://dx.doi.org/10.13039/501100001807 Award Number: 2016/14227-5 Funding provided by: Universidade de São Paulo Crossref Funder Registry ID: http://dx.doi.org/10.13039/501100005639 Award Number: 13.1.1502.9.8 ...
format Other/Unknown Material
author Dextro, Rafael B.
Delbaje, Endrews
Freitas, Paloma N. N.
Geraldes, Vanessa
Pinto, Ernani
Long, Paul F.
Fiore, Marli F.
author_facet Dextro, Rafael B.
Delbaje, Endrews
Freitas, Paloma N. N.
Geraldes, Vanessa
Pinto, Ernani
Long, Paul F.
Fiore, Marli F.
author_sort Dextro, Rafael B.
title Metadata for: Environmental adaptations by the intertidal Antarctic cyanobacterium Halotia branconii CENA392 as revealed using long-read genome sequencing
title_short Metadata for: Environmental adaptations by the intertidal Antarctic cyanobacterium Halotia branconii CENA392 as revealed using long-read genome sequencing
title_full Metadata for: Environmental adaptations by the intertidal Antarctic cyanobacterium Halotia branconii CENA392 as revealed using long-read genome sequencing
title_fullStr Metadata for: Environmental adaptations by the intertidal Antarctic cyanobacterium Halotia branconii CENA392 as revealed using long-read genome sequencing
title_full_unstemmed Metadata for: Environmental adaptations by the intertidal Antarctic cyanobacterium Halotia branconii CENA392 as revealed using long-read genome sequencing
title_sort metadata for: environmental adaptations by the intertidal antarctic cyanobacterium halotia branconii cena392 as revealed using long-read genome sequencing
publisher Zenodo
publishDate 2023
url https://doi.org/10.5061/dryad.k98sf7mb1
genre Antarc*
Antarctic
Antarctica
genre_facet Antarc*
Antarctic
Antarctica
op_relation https://doi.org/10.1099/ijs.0.070078-0
https://doi.org/10.5281/zenodo.7650767
https://zenodo.org/communities/dryad
https://doi.org/10.5061/dryad.k98sf7mb1
oai:zenodo.org:7894016
op_rights info:eu-repo/semantics/openAccess
Creative Commons Zero v1.0 Universal
https://creativecommons.org/publicdomain/zero/1.0/legalcode
op_doi https://doi.org/10.5061/dryad.k98sf7mb110.1099/ijs.0.070078-010.5281/zenodo.7650767
_version_ 1810493767046660096