Sweepstakes reproductive success via pervasive and recurrent selective sweeps
Highly fecund natural populations characterized by high early mortality abound, yet our knowledge about their recruitment dynamics is somewhat rudimentary. This knowledge gap has implications for our understanding of genetic variation, population connectivity, local adaptation, and the resilience of...
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ftzenodo:oai:zenodo.org:7658019 2024-09-09T19:29:46+00:00 Sweepstakes reproductive success via pervasive and recurrent selective sweeps Arnason, Einar Koskela, Jere Halldórsdóttir, Katrín Eldon, Bjarki 2023-02-20 https://doi.org/10.5061/dryad.bcc2fqzgx unknown Zenodo https://doi.org/10.1101/2022.05.29.493887 https://zenodo.org/communities/dryad https://doi.org/10.5061/dryad.bcc2fqzgx oai:zenodo.org:7658019 info:eu-repo/semantics/openAccess Creative Commons Zero v1.0 Universal https://creativecommons.org/publicdomain/zero/1.0/legalcode reproductive sweepstakes selection recruitment dynamics multiple-merger coalescents selective sweeps Atlantic cod reproductive skew info:eu-repo/semantics/other 2023 ftzenodo https://doi.org/10.5061/dryad.bcc2fqzgx10.1101/2022.05.29.493887 2024-07-25T19:27:13Z Highly fecund natural populations characterized by high early mortality abound, yet our knowledge about their recruitment dynamics is somewhat rudimentary. This knowledge gap has implications for our understanding of genetic variation, population connectivity, local adaptation, and the resilience of highly fecund populations. The concept of sweepstakes reproductive success, which posits a considerable variance and skew in individual reproductive output, is key to understanding the distribution of individual reproductive success. However, it still needs to be determined whether highly fecund organisms reproduce through sweepstakes and, if they do, the relative roles of neutral and selective sweepstakes. Here we use coalescent-based statistical analysis of population genomic data to show that selective sweepstakes likely explain recruitment dynamics in the highly fecund Atlantic cod. We show that the Kingman coalescent (modeling no sweepstakes) and the Xi-Beta coalescent (modeling random sweepstakes), including complex demography and background selection, do not provide an adequate fit for the data. The Durrett-Schweinsberg coalescent, in which selective sweepstakes result from recurrent and pervasive selective sweeps of new mutations, offers greater explanatory power. Our results show that models of sweepstakes reproduction and multiple-merger coalescents are relevant and necessary for understanding genetic diversity in highly fecund natural populations. These findings have fundamental implications for understanding the recruitment variation of fish stocks and general evolutionary genomics of high-fecundity organisms. The data are presented as zipped archives of plain text files of site frequency spectrum and 100 bootstrap values for each chromosome and both likelihoods. The data are readable, for example, with R. Funding provided by: Icelandic Research Fund Grant of Excellence* Crossref Funder Registry ID: Award Number: 185151-051 Funding provided by: Deutsche Forschungsgemeinschaft Crossref Funder Registry ... Other/Unknown Material atlantic cod Zenodo |
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Open Polar |
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ftzenodo |
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topic |
reproductive sweepstakes selection recruitment dynamics multiple-merger coalescents selective sweeps Atlantic cod reproductive skew |
spellingShingle |
reproductive sweepstakes selection recruitment dynamics multiple-merger coalescents selective sweeps Atlantic cod reproductive skew Arnason, Einar Koskela, Jere Halldórsdóttir, Katrín Eldon, Bjarki Sweepstakes reproductive success via pervasive and recurrent selective sweeps |
topic_facet |
reproductive sweepstakes selection recruitment dynamics multiple-merger coalescents selective sweeps Atlantic cod reproductive skew |
description |
Highly fecund natural populations characterized by high early mortality abound, yet our knowledge about their recruitment dynamics is somewhat rudimentary. This knowledge gap has implications for our understanding of genetic variation, population connectivity, local adaptation, and the resilience of highly fecund populations. The concept of sweepstakes reproductive success, which posits a considerable variance and skew in individual reproductive output, is key to understanding the distribution of individual reproductive success. However, it still needs to be determined whether highly fecund organisms reproduce through sweepstakes and, if they do, the relative roles of neutral and selective sweepstakes. Here we use coalescent-based statistical analysis of population genomic data to show that selective sweepstakes likely explain recruitment dynamics in the highly fecund Atlantic cod. We show that the Kingman coalescent (modeling no sweepstakes) and the Xi-Beta coalescent (modeling random sweepstakes), including complex demography and background selection, do not provide an adequate fit for the data. The Durrett-Schweinsberg coalescent, in which selective sweepstakes result from recurrent and pervasive selective sweeps of new mutations, offers greater explanatory power. Our results show that models of sweepstakes reproduction and multiple-merger coalescents are relevant and necessary for understanding genetic diversity in highly fecund natural populations. These findings have fundamental implications for understanding the recruitment variation of fish stocks and general evolutionary genomics of high-fecundity organisms. The data are presented as zipped archives of plain text files of site frequency spectrum and 100 bootstrap values for each chromosome and both likelihoods. The data are readable, for example, with R. Funding provided by: Icelandic Research Fund Grant of Excellence* Crossref Funder Registry ID: Award Number: 185151-051 Funding provided by: Deutsche Forschungsgemeinschaft Crossref Funder Registry ... |
format |
Other/Unknown Material |
author |
Arnason, Einar Koskela, Jere Halldórsdóttir, Katrín Eldon, Bjarki |
author_facet |
Arnason, Einar Koskela, Jere Halldórsdóttir, Katrín Eldon, Bjarki |
author_sort |
Arnason, Einar |
title |
Sweepstakes reproductive success via pervasive and recurrent selective sweeps |
title_short |
Sweepstakes reproductive success via pervasive and recurrent selective sweeps |
title_full |
Sweepstakes reproductive success via pervasive and recurrent selective sweeps |
title_fullStr |
Sweepstakes reproductive success via pervasive and recurrent selective sweeps |
title_full_unstemmed |
Sweepstakes reproductive success via pervasive and recurrent selective sweeps |
title_sort |
sweepstakes reproductive success via pervasive and recurrent selective sweeps |
publisher |
Zenodo |
publishDate |
2023 |
url |
https://doi.org/10.5061/dryad.bcc2fqzgx |
genre |
atlantic cod |
genre_facet |
atlantic cod |
op_relation |
https://doi.org/10.1101/2022.05.29.493887 https://zenodo.org/communities/dryad https://doi.org/10.5061/dryad.bcc2fqzgx oai:zenodo.org:7658019 |
op_rights |
info:eu-repo/semantics/openAccess Creative Commons Zero v1.0 Universal https://creativecommons.org/publicdomain/zero/1.0/legalcode |
op_doi |
https://doi.org/10.5061/dryad.bcc2fqzgx10.1101/2022.05.29.493887 |
_version_ |
1809898867953500160 |