Linking the metabolic rate of individuals to species ecology and life history in key Arctic copepods
This folder contains data and code for the manuscript "Linking the metabolic rate of individuals to species ecology and life history in key Arctic copepods" The first script to run is the "rolling regression and adding covariates to MR data.R", this will read in all the files wit...
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ftzenodo:oai:zenodo.org:7636925 2023-11-05T03:39:17+01:00 Linking the metabolic rate of individuals to species ecology and life history in key Arctic copepods Konrad Karlsson Janne Søreide 2023-02-13 https://zenodo.org/record/7636925 https://doi.org/10.5281/zenodo.7636925 eng eng doi:10.5281/zenodo.7636924 https://zenodo.org/record/7636925 https://doi.org/10.5281/zenodo.7636925 oai:zenodo.org:7636925 info:eu-repo/semantics/openAccess https://creativecommons.org/licenses/by/4.0/legalcode aerobic scope invertebrates physiology copepods info:eu-repo/semantics/other dataset 2023 ftzenodo https://doi.org/10.5281/zenodo.763692510.5281/zenodo.7636924 2023-10-10T23:03:10Z This folder contains data and code for the manuscript "Linking the metabolic rate of individuals to species ecology and life history in key Arctic copepods" The first script to run is the "rolling regression and adding covariates to MR data.R", this will read in all the files with oxygen measurements, dry weight, and species and life stage information. The code will fit and predict estimates for each individual, calculate O2 from calibration data, subtract background respiration, run the rolling regression, and add the covariates DW, species and life stage to the metabolic rate data, and write the resulting data fame to a .txt file. The second script "lme4 Analysis and figures 5 6 7.R" will read in the data from the first script. Here the AMR RMR and aerobic scope is estimated by Density Estimation via Model-Based Clustering. The resulting data is fitted with a mixed model 'lmer'. The remaining part of the script make the predictions that are presented in the text of the manuscript and that are shown in figure 5, 6, and 7. Further information is annotated in the scripts Dataset Arctic Copepods Zenodo |
institution |
Open Polar |
collection |
Zenodo |
op_collection_id |
ftzenodo |
language |
English |
topic |
aerobic scope invertebrates physiology copepods |
spellingShingle |
aerobic scope invertebrates physiology copepods Konrad Karlsson Janne Søreide Linking the metabolic rate of individuals to species ecology and life history in key Arctic copepods |
topic_facet |
aerobic scope invertebrates physiology copepods |
description |
This folder contains data and code for the manuscript "Linking the metabolic rate of individuals to species ecology and life history in key Arctic copepods" The first script to run is the "rolling regression and adding covariates to MR data.R", this will read in all the files with oxygen measurements, dry weight, and species and life stage information. The code will fit and predict estimates for each individual, calculate O2 from calibration data, subtract background respiration, run the rolling regression, and add the covariates DW, species and life stage to the metabolic rate data, and write the resulting data fame to a .txt file. The second script "lme4 Analysis and figures 5 6 7.R" will read in the data from the first script. Here the AMR RMR and aerobic scope is estimated by Density Estimation via Model-Based Clustering. The resulting data is fitted with a mixed model 'lmer'. The remaining part of the script make the predictions that are presented in the text of the manuscript and that are shown in figure 5, 6, and 7. Further information is annotated in the scripts |
format |
Dataset |
author |
Konrad Karlsson Janne Søreide |
author_facet |
Konrad Karlsson Janne Søreide |
author_sort |
Konrad Karlsson |
title |
Linking the metabolic rate of individuals to species ecology and life history in key Arctic copepods |
title_short |
Linking the metabolic rate of individuals to species ecology and life history in key Arctic copepods |
title_full |
Linking the metabolic rate of individuals to species ecology and life history in key Arctic copepods |
title_fullStr |
Linking the metabolic rate of individuals to species ecology and life history in key Arctic copepods |
title_full_unstemmed |
Linking the metabolic rate of individuals to species ecology and life history in key Arctic copepods |
title_sort |
linking the metabolic rate of individuals to species ecology and life history in key arctic copepods |
publishDate |
2023 |
url |
https://zenodo.org/record/7636925 https://doi.org/10.5281/zenodo.7636925 |
genre |
Arctic Copepods |
genre_facet |
Arctic Copepods |
op_relation |
doi:10.5281/zenodo.7636924 https://zenodo.org/record/7636925 https://doi.org/10.5281/zenodo.7636925 oai:zenodo.org:7636925 |
op_rights |
info:eu-repo/semantics/openAccess https://creativecommons.org/licenses/by/4.0/legalcode |
op_doi |
https://doi.org/10.5281/zenodo.763692510.5281/zenodo.7636924 |
_version_ |
1781695096511528960 |