Concentrations of dissolved dimethyl sulfide (DMS), methanethiol and other trace gases in context of microbial communities from the temperate Atlantic to the Arctic Ocean

This archive contains bioinformatic code and data files to reproduce bacterial analyses from Gros et al. ( Biogeosciences; https://doi.org/10.5194/bg-2022-150). In this study, seawater samples collected along an Atlantic-Arctic transect (55-80°N) were evaluated for microbial community composition an...

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Main Authors: Wietz, Matthias, Gros, Valérie, Bonsang, Bernard, Sarda-Estève, Roland, Nikolopoulos, Anna, Metfies, Katja, Peeken, Ilka
Format: Other/Unknown Material
Language:English
Published: Zenodo 2023
Subjects:
marine bacteria
phytoplankton
chlorophyll
DMS
methanethiol
isoprene
carbon monoxide
acetone
acetonitrile
acetaldehyde
seawater
trace gases
sulfur cycle
Arctic Ocean
Atlantic Arctic
Atlantic-Arctic
Phytoplankton
Online Access:https://doi.org/10.5281/zenodo.7609524
id ftzenodo:oai:zenodo.org:7609524
record_format openpolar
spelling ftzenodo:oai:zenodo.org:7609524 2024-09-15T17:53:38+00:00 Concentrations of dissolved dimethyl sulfide (DMS), methanethiol and other trace gases in context of microbial communities from the temperate Atlantic to the Arctic Ocean Wietz, Matthias Gros, Valérie Bonsang, Bernard Sarda-Estève, Roland Nikolopoulos, Anna Metfies, Katja Peeken, Ilka 2023-02-06 https://doi.org/10.5281/zenodo.7609524 eng eng Zenodo https://doi.org/10.5281/zenodo.7609523 https://doi.org/10.5281/zenodo.7609524 oai:zenodo.org:7609524 info:eu-repo/semantics/openAccess Creative Commons Attribution 4.0 International https://creativecommons.org/licenses/by/4.0/legalcode Biogeosciences, (2023-02-06) marine bacteria phytoplankton chlorophyll DMS methanethiol isoprene carbon monoxide acetone acetonitrile acetaldehyde seawater trace gases sulfur cycle info:eu-repo/semantics/other 2023 ftzenodo https://doi.org/10.5281/zenodo.760952410.5281/zenodo.7609523 2024-07-25T21:31:34Z This archive contains bioinformatic code and data files to reproduce bacterial analyses from Gros et al. ( Biogeosciences; https://doi.org/10.5194/bg-2022-150). In this study, seawater samples collected along an Atlantic-Arctic transect (55-80°N) were evaluated for microbial community composition and trace gas concentrations. Microbes were sampled underway using "AUTOFIM" automatic filtration; and bacterial communities amplicon-sequenced using 16S rRNA gene primers. Raw sequence data is available at ENA under BioProject PRJEB50492. The archive contains: - Rmarkdown for primer-clipping, ASV generation and taxonomy assignment: 1_DADA.Rmd - Rscript for ASV and metadata processing; alpha-diversity calculations: 2_DataLoad.R - Rscript for generation of manuscript figures: 3_Results.R - Rscript for generation of supplementary figures: 4_Supplement.R - Metadata and environmental parameters as .txt files Other/Unknown Material Arctic Ocean Atlantic Arctic Atlantic-Arctic Phytoplankton Zenodo
institution Open Polar
collection Zenodo
op_collection_id ftzenodo
language English
topic marine bacteria
phytoplankton
chlorophyll
DMS
methanethiol
isoprene
carbon monoxide
acetone
acetonitrile
acetaldehyde
seawater
trace gases
sulfur cycle
spellingShingle marine bacteria
phytoplankton
chlorophyll
DMS
methanethiol
isoprene
carbon monoxide
acetone
acetonitrile
acetaldehyde
seawater
trace gases
sulfur cycle
Wietz, Matthias
Gros, Valérie
Bonsang, Bernard
Sarda-Estève, Roland
Nikolopoulos, Anna
Metfies, Katja
Peeken, Ilka
Concentrations of dissolved dimethyl sulfide (DMS), methanethiol and other trace gases in context of microbial communities from the temperate Atlantic to the Arctic Ocean
topic_facet marine bacteria
phytoplankton
chlorophyll
DMS
methanethiol
isoprene
carbon monoxide
acetone
acetonitrile
acetaldehyde
seawater
trace gases
sulfur cycle
description This archive contains bioinformatic code and data files to reproduce bacterial analyses from Gros et al. ( Biogeosciences; https://doi.org/10.5194/bg-2022-150). In this study, seawater samples collected along an Atlantic-Arctic transect (55-80°N) were evaluated for microbial community composition and trace gas concentrations. Microbes were sampled underway using "AUTOFIM" automatic filtration; and bacterial communities amplicon-sequenced using 16S rRNA gene primers. Raw sequence data is available at ENA under BioProject PRJEB50492. The archive contains: - Rmarkdown for primer-clipping, ASV generation and taxonomy assignment: 1_DADA.Rmd - Rscript for ASV and metadata processing; alpha-diversity calculations: 2_DataLoad.R - Rscript for generation of manuscript figures: 3_Results.R - Rscript for generation of supplementary figures: 4_Supplement.R - Metadata and environmental parameters as .txt files
format Other/Unknown Material
author Wietz, Matthias
Gros, Valérie
Bonsang, Bernard
Sarda-Estève, Roland
Nikolopoulos, Anna
Metfies, Katja
Peeken, Ilka
author_facet Wietz, Matthias
Gros, Valérie
Bonsang, Bernard
Sarda-Estève, Roland
Nikolopoulos, Anna
Metfies, Katja
Peeken, Ilka
author_sort Wietz, Matthias
title Concentrations of dissolved dimethyl sulfide (DMS), methanethiol and other trace gases in context of microbial communities from the temperate Atlantic to the Arctic Ocean
title_short Concentrations of dissolved dimethyl sulfide (DMS), methanethiol and other trace gases in context of microbial communities from the temperate Atlantic to the Arctic Ocean
title_full Concentrations of dissolved dimethyl sulfide (DMS), methanethiol and other trace gases in context of microbial communities from the temperate Atlantic to the Arctic Ocean
title_fullStr Concentrations of dissolved dimethyl sulfide (DMS), methanethiol and other trace gases in context of microbial communities from the temperate Atlantic to the Arctic Ocean
title_full_unstemmed Concentrations of dissolved dimethyl sulfide (DMS), methanethiol and other trace gases in context of microbial communities from the temperate Atlantic to the Arctic Ocean
title_sort concentrations of dissolved dimethyl sulfide (dms), methanethiol and other trace gases in context of microbial communities from the temperate atlantic to the arctic ocean
publisher Zenodo
publishDate 2023
url https://doi.org/10.5281/zenodo.7609524
genre Arctic Ocean
Atlantic Arctic
Atlantic-Arctic
Phytoplankton
genre_facet Arctic Ocean
Atlantic Arctic
Atlantic-Arctic
Phytoplankton
op_source Biogeosciences, (2023-02-06)
op_relation https://doi.org/10.5281/zenodo.7609523
https://doi.org/10.5281/zenodo.7609524
oai:zenodo.org:7609524
op_rights info:eu-repo/semantics/openAccess
Creative Commons Attribution 4.0 International
https://creativecommons.org/licenses/by/4.0/legalcode
op_doi https://doi.org/10.5281/zenodo.760952410.5281/zenodo.7609523
_version_ 1810429559191896064

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