A chromosome-scale reference genome assembly of the great sand eel, Hyperoplus lanceolatus
Despite increasing sequencing efforts, numerous fish families still lack a reference genome, which complicates genetic research. One such understudied family is the sand lances (Ammodytidae, literally: 'sand burrower'), a globally distributed clade of over 30 fish species that tend to avoi...
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ftzenodo:oai:zenodo.org:7484530 2024-09-15T18:11:18+00:00 A chromosome-scale reference genome assembly of the great sand eel, Hyperoplus lanceolatus Winter, Sven de Raad, Jordi Wolf, Magnus Coimbra, Raphael T. F. de Jong, Menno J. Schöneberg, Yannis Christoph, Maria von Klopotek, Hagen Bach, Katharina Pashm Foroush, Behgol Hanack, Wiebke Kauffeldt, Aaron Hagen Milz, Tim Ngetich, Emmanuel Kipruto Wenz, Christian Sonnewald, Moritz Nilsson, Maria A. Janke, Axel 2023-01-13 https://doi.org/10.5061/dryad.7pvmcvdxv unknown Zenodo https://zenodo.org/communities/dryad https://doi.org/10.5061/dryad.7pvmcvdxv oai:zenodo.org:7484530 info:eu-repo/semantics/openAccess Creative Commons Zero v1.0 Universal https://creativecommons.org/publicdomain/zero/1.0/legalcode info:eu-repo/semantics/other 2023 ftzenodo https://doi.org/10.5061/dryad.7pvmcvdxv 2024-07-27T00:25:34Z Despite increasing sequencing efforts, numerous fish families still lack a reference genome, which complicates genetic research. One such understudied family is the sand lances (Ammodytidae, literally: 'sand burrower'), a globally distributed clade of over 30 fish species that tend to avoid tidal currents by burrowing into the sand. Here, we present the first annotated chromosome-level genome assembly of the great sand eel ( Hyperoplus lanceolatus ). The genome assembly was generated using Oxford Nanopore Technologies long sequencing reads and Illumina short reads for polishing. The final assembly has a total length of 808.5 Mbp, of which 97.1% were anchored into 24 chromosome-scale scaffolds using proximity-ligation scaffolding. The assembly is highly contiguous with a scaffold and contig N50 of 33.7 Mbp and 31.3 Mbp, respectively, and has a BUSCO completeness score of 96.9%. The presented genome assembly is a valuable resource for future studies of sand lances, as they are of great ecological and commercial importance and may also contribute to studies aiming to resolve the suprafamiliar taxonomy of bony fishes. Funding provided by: LOEWE Centre for Translational Biodiversity Genomics (LOEWE-TBG)* Crossref Funder Registry ID: Award Number: Other/Unknown Material Hyperoplus lanceolatus Zenodo |
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Despite increasing sequencing efforts, numerous fish families still lack a reference genome, which complicates genetic research. One such understudied family is the sand lances (Ammodytidae, literally: 'sand burrower'), a globally distributed clade of over 30 fish species that tend to avoid tidal currents by burrowing into the sand. Here, we present the first annotated chromosome-level genome assembly of the great sand eel ( Hyperoplus lanceolatus ). The genome assembly was generated using Oxford Nanopore Technologies long sequencing reads and Illumina short reads for polishing. The final assembly has a total length of 808.5 Mbp, of which 97.1% were anchored into 24 chromosome-scale scaffolds using proximity-ligation scaffolding. The assembly is highly contiguous with a scaffold and contig N50 of 33.7 Mbp and 31.3 Mbp, respectively, and has a BUSCO completeness score of 96.9%. The presented genome assembly is a valuable resource for future studies of sand lances, as they are of great ecological and commercial importance and may also contribute to studies aiming to resolve the suprafamiliar taxonomy of bony fishes. Funding provided by: LOEWE Centre for Translational Biodiversity Genomics (LOEWE-TBG)* Crossref Funder Registry ID: Award Number: |
format |
Other/Unknown Material |
author |
Winter, Sven de Raad, Jordi Wolf, Magnus Coimbra, Raphael T. F. de Jong, Menno J. Schöneberg, Yannis Christoph, Maria von Klopotek, Hagen Bach, Katharina Pashm Foroush, Behgol Hanack, Wiebke Kauffeldt, Aaron Hagen Milz, Tim Ngetich, Emmanuel Kipruto Wenz, Christian Sonnewald, Moritz Nilsson, Maria A. Janke, Axel |
spellingShingle |
Winter, Sven de Raad, Jordi Wolf, Magnus Coimbra, Raphael T. F. de Jong, Menno J. Schöneberg, Yannis Christoph, Maria von Klopotek, Hagen Bach, Katharina Pashm Foroush, Behgol Hanack, Wiebke Kauffeldt, Aaron Hagen Milz, Tim Ngetich, Emmanuel Kipruto Wenz, Christian Sonnewald, Moritz Nilsson, Maria A. Janke, Axel A chromosome-scale reference genome assembly of the great sand eel, Hyperoplus lanceolatus |
author_facet |
Winter, Sven de Raad, Jordi Wolf, Magnus Coimbra, Raphael T. F. de Jong, Menno J. Schöneberg, Yannis Christoph, Maria von Klopotek, Hagen Bach, Katharina Pashm Foroush, Behgol Hanack, Wiebke Kauffeldt, Aaron Hagen Milz, Tim Ngetich, Emmanuel Kipruto Wenz, Christian Sonnewald, Moritz Nilsson, Maria A. Janke, Axel |
author_sort |
Winter, Sven |
title |
A chromosome-scale reference genome assembly of the great sand eel, Hyperoplus lanceolatus |
title_short |
A chromosome-scale reference genome assembly of the great sand eel, Hyperoplus lanceolatus |
title_full |
A chromosome-scale reference genome assembly of the great sand eel, Hyperoplus lanceolatus |
title_fullStr |
A chromosome-scale reference genome assembly of the great sand eel, Hyperoplus lanceolatus |
title_full_unstemmed |
A chromosome-scale reference genome assembly of the great sand eel, Hyperoplus lanceolatus |
title_sort |
chromosome-scale reference genome assembly of the great sand eel, hyperoplus lanceolatus |
publisher |
Zenodo |
publishDate |
2023 |
url |
https://doi.org/10.5061/dryad.7pvmcvdxv |
genre |
Hyperoplus lanceolatus |
genre_facet |
Hyperoplus lanceolatus |
op_relation |
https://zenodo.org/communities/dryad https://doi.org/10.5061/dryad.7pvmcvdxv oai:zenodo.org:7484530 |
op_rights |
info:eu-repo/semantics/openAccess Creative Commons Zero v1.0 Universal https://creativecommons.org/publicdomain/zero/1.0/legalcode |
op_doi |
https://doi.org/10.5061/dryad.7pvmcvdxv |
_version_ |
1810448889281511424 |